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    wu:fe05a04 wu:fe05a04 [ Danio rerio (zebrafish) ]

    Gene ID: 100007321, updated on 8-Mar-2024

    Summary

    Official Symbol
    wu:fe05a04provided by ZNC
    Official Full Name
    wu:fe05a04provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4873
    See related
    Ensembl:ENSDARG00000087530 AllianceGenome:ZFIN:ZDB-GENE-030131-4873
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fe05a04
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF214 (zinc finger protein 214) and ZNF784 (zinc finger protein 784). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See wu:fe05a04 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (25171790..25181547)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (25257198..25266515)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene trypsin-2-like Neighboring gene zinc finger protein 576, tandem duplicate 2 Neighboring gene hematopoietic cell signal transducer Neighboring gene transmembrane immune signaling adaptor TYROBP

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      25171790..25181547
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466915.1XP_021322590.1  zinc finger protein 628

      UniProtKB/TrEMBL
      A0A8M9PN12, E7F5B0
      Related
      ENSDARP00000128871.1, ENSDART00000156416.2
      Conserved Domains (2) summary
      sd00017
      Location:216236
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:229251
      zf-H2C2_2; Zinc-finger double domain
    2. XM_017351499.2XP_017206988.1  zinc finger protein 628

      UniProtKB/TrEMBL
      A0A8M9PN12, E7F5B0
      Conserved Domains (2) summary
      sd00017
      Location:216236
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:229251
      zf-H2C2_2; Zinc-finger double domain