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    Riiad1 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 66353, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Riiad1provided by MGI
    Official Full Name
    regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1provided by MGI
    Primary source
    MGI:MGI:1913603
    See related
    Ensembl:ENSMUSG00000028139 AllianceGenome:MGI:1913603
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ncrna00166; 2310007A19Rik
    Summary
    Is expressed in several structures, including adrenal gland; brain; gut; reproductive system; and respiratory system. Orthologous to human RIIAD1 (regulatory subunit of type II PKA R-subunit domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 30.8), CNS E14 (RPKM 3.3) and 4 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Riiad1 in Genome Data Viewer
    Location:
    3 F2.1; 3 40.71 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (94372291..94387661, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (94464984..94480326, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S2-like Neighboring gene STARR-positive B cell enhancer mm9_chr3:94260392-94260693 Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene CUGBP, Elav-like family member 3 Neighboring gene sorting nexin family member 27 Neighboring gene STARR-seq mESC enhancer starr_08351 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94386567-94386676 Neighboring gene translation machinery-associated protein 7 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Uncoupling of bait-protein expression from the prey protein environment adds versatility for cell and tissue interaction proteomics and reveals a complex of CARP-1 and the PKA Cbeta1 subunit. Erlbruch A, et al. Proteomics, 2010 Aug. PMID 20564261
    2. Tissue expression patterns identify mouse cilia genes. McClintock TS, et al. Physiol Genomics, 2008 Jan 17. PMID 17971504
    3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    4. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC129400

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RIIa domain-containing protein 1
    Names
    RIIa domain-containing protein C1orf230 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417792.1 → NP_001404721.1  RIIa domain-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC122808

    2. NM_025506.2 → NP_079782.1  RIIa domain-containing protein 1 isoform 1

      See identical proteins and their annotated locations for NP_079782.1

      Status: PROVISIONAL

      Source sequence(s)
      AK009192, AK019569
      Consensus CDS
      CCDS38535.1
      UniProtKB/Swiss-Prot
      Q3KNY5, Q9D7J0
      Related
      ENSMUSP00000029785.3, ENSMUST00000029785.4
      Conserved Domains (1) summary
      cl02594
      Location:75 → 99
      DD_R_PKA; Dimerization/Docking domain of the Regulatory subunit of cAMP-dependent protein kinase and similar domains

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      94372291..94387661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036163224.1 → XP_036019117.1  RIIa domain-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3KNY5, Q9D7J0
      Conserved Domains (1) summary
      cl02594
      Location:75 → 99
      DD_R_PKA; Dimerization/Docking domain of the Regulatory subunit of cAMP-dependent protein kinase and similar domains
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3KNY5.2 GenPept UniProtKB/Swiss-Prot:Q3KNY5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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