U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    4931429L15Rik RIKEN cDNA 4931429L15 gene [ Mus musculus (house mouse) ]

    Gene ID: 74361, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    4931429L15Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4931429L15 geneprovided by MGI
    Primary source
    MGI:MGI:1921611
    See related
    Ensembl:ENSMUSG00000056617 AllianceGenome:MGI:1921611
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 28.5) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    9 A5.2; 9 25.39 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (46212211..46231284, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (46300913..46319986, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1112 Neighboring gene ZPR1 zinc finger Neighboring gene STARR-positive B cell enhancer ABC_E9758 Neighboring gene STARR-seq mESC enhancer starr_24026 Neighboring gene BUD13 homolog Neighboring gene predicted gene, 39329 Neighboring gene RIKEN cDNA 4930448E22 gene Neighboring gene STARR-seq mESC enhancer starr_24028 Neighboring gene predicted gene, 31374

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC74361

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183104.2 → NP_898927.2  uncharacterized protein LOC74361

      Status: VALIDATED

      Source sequence(s)
      AC164105
      Consensus CDS
      CCDS52785.1
      UniProtKB/TrEMBL
      E9PVU2
      Related
      ENSMUSP00000124991.2, ENSMUST00000159565.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      46212211..46231284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242616.1 → XP_011240918.1  uncharacterized protein LOC74361 isoform X3

    2. XM_030244685.2 → XP_030100545.1  uncharacterized protein LOC74361 isoform X1

    3. XM_030244684.1 → XP_030100544.1  uncharacterized protein LOC74361 isoform X1

    4. XM_030244683.1 → XP_030100543.1  uncharacterized protein LOC74361 isoform X1

    5. XM_030244686.1 → XP_030100546.1  uncharacterized protein LOC74361 isoform X2

    RNA

    1. XR_004935587.1 RNA Sequence

    2. XR_003948040.1 RNA Sequence

    3. XR_001779048.1 RNA Sequence

    4. XR_003948039.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous