U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Tmem252 transmembrane protein 252 [ Mus musculus (house mouse) ]

    Gene ID: 226040, updated on 5-Mar-2024

    Summary

    Official Symbol
    Tmem252provided by MGI
    Official Full Name
    transmembrane protein 252provided by MGI
    Primary source
    MGI:MGI:3583948
    See related
    Ensembl:ENSMUSG00000048572 AllianceGenome:MGI:3583948
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E030010A14Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; renal calyx; and spinal cord. Orthologous to human TMEM252 (transmembrane protein 252). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in bladder adult (RPKM 63.8), kidney adult (RPKM 22.6) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tmem252 in Genome Data Viewer
    Location:
    19 B; 19 19.77 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (24651372..24657025)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (24674008..24679661)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type 1 beta Neighboring gene STARR-seq mESC enhancer starr_45802 Neighboring gene predicted gene, 52399 Neighboring gene STARR-seq mESC enhancer starr_45804 Neighboring gene STARR-seq mESC enhancer starr_45805 Neighboring gene predicted gene, 50341 Neighboring gene STARR-seq mESC enhancer starr_45806 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene phosphoglucomutase 5 Neighboring gene predicted gene, 38581

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Clone Names

    • MGC107144

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    transmembrane protein 252
    Names
    transmembrane protein C9orf71 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183160.3NP_898983.1  transmembrane protein 252

      See identical proteins and their annotated locations for NP_898983.1

      Status: PROVISIONAL

      Source sequence(s)
      AK143762
      Consensus CDS
      CCDS29713.1
      UniProtKB/Swiss-Prot
      Q3UP68, Q8C353
      UniProtKB/TrEMBL
      Q3UQ16
      Related
      ENSMUSP00000060863.5, ENSMUST00000057243.6
      Conserved Domains (1) summary
      pfam15664
      Location:29166
      TMEM252; Transmembrane protein 252 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      24651372..24657025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)