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    9930012K11Rik RIKEN cDNA 9930012K11 gene [ Mus musculus (house mouse) ]

    Gene ID: 268759, updated on 5-Mar-2024

    Summary

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    Official Symbol
    9930012K11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9930012K11 geneprovided by MGI
    Primary source
    MGI:MGI:2145726
    See related
    Ensembl:ENSMUSG00000044551 AllianceGenome:MGI:2145726
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in metanephros; testis; and thyroid gland. Orthologous to human C8orf58 (chromosome 8 open reading frame 58). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in lung adult (RPKM 5.0), thymus adult (RPKM 4.4) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    14 D2; 14 36.25 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (70391854..70396951, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (70154405..70159502, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:70499772-70499955 Neighboring gene bridging integrator 3 Neighboring gene cell cycle activator and apoptosis regulator 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:70553578-70553761 Neighboring gene CapStarr-seq enhancer MGSCv37_chr14:70559515-70559758 Neighboring gene PDZ and LIM domain 2 Neighboring gene STARR-positive B cell enhancer ABC_E7331 Neighboring gene sorbin and SH3 domain containing 3 Neighboring gene predicted gene, 26908

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC91159

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C8orf58 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004155.2 → NP_001004155.2  uncharacterized protein C8orf58 homolog isoform 1

      See identical proteins and their annotated locations for NP_001004155.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK132259, BB870379, BC080738
      Consensus CDS
      CCDS36967.1
      UniProtKB/Swiss-Prot
      Q66JV7
      Related
      ENSMUSP00000061834.8, ENSMUST00000058240.14
      Conserved Domains (1) summary
      pfam15552
      Location:78 → 366
      DUF4657; Domain of unknown function (DUF4657)

    2. NM_001112735.1 → NP_001106206.1  uncharacterized protein C8orf58 homolog isoform 2

      See identical proteins and their annotated locations for NP_001106206.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
      Source sequence(s)
      AK132259, BB870379, BC080738
      Consensus CDS
      CCDS49535.1
      UniProtKB/Swiss-Prot
      Q3V1T6, Q66JV7, Q8K281
      Related
      ENSMUSP00000122309.2, ENSMUST00000153871.2
      Conserved Domains (1) summary
      pfam15552
      Location:78 → 365
      DUF4657; Domain of unknown function (DUF4657)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      70391854..70396951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q66JV7.2 GenPept UniProtKB/Swiss-Prot:Q66JV7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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