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    Mab21l4 mab-21-like 4 [ Mus musculus (house mouse) ]

    Gene ID: 71874, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Mab21l4provided by MGI
    Official Full Name
    mab-21-like 4provided by MGI
    Primary source
    MGI:MGI:1919124
    See related
    Ensembl:ENSMUSG00000034159 AllianceGenome:MGI:1919124
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310007B03Rik
    Summary
    Orthologous to human MAB21L4 (mab-21 like 4). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in lung adult (RPKM 29.2), colon adult (RPKM 5.8) and 6 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    1 D; 1 47.03 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (93079076..93088679, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (93151354..93160956, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36472 Neighboring gene alanine-glyoxylate aminotransferase Neighboring gene ciliary rootlet coiled-coil, rootletin family member 2 Neighboring gene STARR-seq mESC enhancer starr_01724 Neighboring gene STARR-seq mESC enhancer starr_01726 Neighboring gene sushi, nidogen and EGF-like domains 1 Neighboring gene microRNA 6901

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 
    • Endonuclease-mediated (2) 

    General gene information

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    Homology

    Clone Names

    • MGC107226

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein mab-21-like 4
    Names
    uncharacterized protein C2orf54 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159940.1 → NP_001153412.1  protein mab-21-like 4

      See identical proteins and their annotated locations for NP_001153412.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      AK009193, AK081300
      Consensus CDS
      CCDS15185.1
      UniProtKB/Swiss-Prot
      Q5FWA3, Q8C4S6, Q8CEZ4
      Related
      ENSMUSP00000115971.2, ENSMUST00000143419.2
      Conserved Domains (1) summary
      pfam03281
      Location:146 → 369
      Mab-21; Mab-21 protein

    2. NM_172411.4 → NP_765999.3  protein mab-21-like 4

      See identical proteins and their annotated locations for NP_765999.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has the 5'-most transcription start site. Variants 1 and 2 both encode the same protein.
      Source sequence(s)
      AK081300, BC089525
      Consensus CDS
      CCDS15185.1
      UniProtKB/Swiss-Prot
      Q5FWA3, Q8C4S6, Q8CEZ4
      Related
      ENSMUSP00000035332.6, ENSMUST00000043718.12
      Conserved Domains (1) summary
      pfam03281
      Location:146 → 369
      Mab-21; Mab-21 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      93079076..93088679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006529877.3 → XP_006529940.1  protein mab-21-like 4 isoform X1

      Conserved Domains (1) summary
      pfam03281
      Location:104 → 325
      Mab-21; Mab-21 protein

    2. XM_006529878.3 → XP_006529941.1  protein mab-21-like 4 isoform X2

      Conserved Domains (1) summary
      pfam03281
      Location:20 → 241
      Mab-21; Mab-21 protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CEZ4.2 GenPept UniProtKB/Swiss-Prot:Q8CEZ4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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