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    Phldb2 pleckstrin homology like domain, family B, member 2 [ Mus musculus (house mouse) ]

    Gene ID: 208177, updated on 5-Mar-2024

    Summary

    Official Symbol
    Phldb2provided by MGI
    Official Full Name
    pleckstrin homology like domain, family B, member 2provided by MGI
    Primary source
    MGI:MGI:2444981
    See related
    Ensembl:ENSMUSG00000033149 AllianceGenome:MGI:2444981
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    LL5b; LL5beta; C820004H04Rik
    Summary
    Predicted to be involved in several processes, including negative regulation of focal adhesion assembly; regulation of cytoskeleton organization; and regulation of embryonic development. Predicted to be located in several cellular components, including cell leading edge; cytosol; and intermediate filament cytoskeleton. Predicted to be active in basal cortex. Predicted to colocalize with focal adhesion. Orthologous to human PHLDB2 (pleckstrin homology like domain family B member 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in bladder adult (RPKM 19.0), limb E14.5 (RPKM 13.1) and 20 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    16 B5; 16 30.08 cM
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (45566593..45773961, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (45746230..45953598, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40920 Neighboring gene transgelin 3 Neighboring gene STARR-seq mESC enhancer starr_40921 Neighboring gene abhydrolase domain containing 10 Neighboring gene STARR-seq mESC enhancer starr_40922 Neighboring gene predicted gene 15638 Neighboring gene phosphatidylinositol-specific phospholipase C, X domain containing 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:46006394-46006690 Neighboring gene STARR-positive B cell enhancer ABC_E4173 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:46011002-46011185 Neighboring gene predicted gene, 24754

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in basal cortex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in basal cortex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell leading edge ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with focal adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intermediate filament cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    pleckstrin homology-like domain family B member 2
    Names
    protein LL5-beta

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252442.1NP_001239371.1  pleckstrin homology-like domain family B member 2 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AK087133, AK165251, BB851780, BC050915, BY442240
      Consensus CDS
      CCDS57031.1
      UniProtKB/TrEMBL
      D3Z069
      Related
      ENSMUSP00000075672.6, ENSMUST00000076333.12
      Conserved Domains (4) summary
      cd14673
      Location:11911295
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam00169
      Location:11941290
      PH; PH domain
      cl02488
      Location:597786
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl19107
      Location:10851155
      SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
    2. NM_001357078.1NP_001344007.1  pleckstrin homology-like domain family B member 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC164979, AC166572
      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (4) summary
      TIGR00618
      Location:5231070
      sbcc; exonuclease SbcC
      COG1196
      Location:575767
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:10951199
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:9871054
      DUF5401; Family of unknown function (DUF5401)
    3. NM_153412.4NP_700461.2  pleckstrin homology-like domain family B member 2 isoform 2

      See identical proteins and their annotated locations for NP_700461.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon and uses an alternate splice site in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC164979, AC166572
      Consensus CDS
      CCDS28202.1
      UniProtKB/Swiss-Prot
      Q3TNI3, Q80Y16, Q8BKV3, Q8K1N2
      UniProtKB/TrEMBL
      D3Z069
      Related
      ENSMUSP00000046496.7, ENSMUST00000036355.13
      Conserved Domains (4) summary
      cd14673
      Location:11381242
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam00169
      Location:11411237
      PH; PH domain
      cl02488
      Location:597786
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl19107
      Location:10321102
      SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      45566593..45773961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036159845.1XP_036015738.1  pleckstrin homology-like domain family B member 2 isoform X20

      UniProtKB/TrEMBL
      F6QU68, Q8BZE3
      Related
      ENSMUSP00000119718.2, ENSMUST00000131003.8
      Conserved Domains (3) summary
      cd14673
      Location:507611
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      TIGR02168
      Location:30180
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam17380
      Location:399466
      DUF5401; Family of unknown function (DUF5401)
    2. XM_006521926.4XP_006521989.1  pleckstrin homology-like domain family B member 2 isoform X7

      See identical proteins and their annotated locations for XP_006521989.1

      UniProtKB/TrEMBL
      D3Z069
      Related
      ENSMUSP00000123284.2, ENSMUST00000134802.8
      Conserved Domains (3) summary
      COG1196
      Location:584847
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11831287
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam02463
      Location:6261168
      SMC_N; RecF/RecN/SMC N terminal domain
    3. XM_006521921.4XP_006521984.1  pleckstrin homology-like domain family B member 2 isoform X2

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:580843
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:12401344
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam00769
      Location:11321205
      ERM; Ezrin/radixin/moesin family
    4. XM_030249020.1XP_030104880.1  pleckstrin homology-like domain family B member 2 isoform X15

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:620841
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:10921196
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:9871055
      DUF5401; Family of unknown function (DUF5401)
    5. XM_006521928.4XP_006521991.1  pleckstrin homology-like domain family B member 2 isoform X10

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      TIGR00618
      Location:5681115
      sbcc; exonuclease SbcC
      COG1196
      Location:620812
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11401244
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    6. XM_006521923.4XP_006521986.1  pleckstrin homology-like domain family B member 2 isoform X5

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:620812
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:12011305
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam00769
      Location:10931166
      ERM; Ezrin/radixin/moesin family
    7. XM_036159842.1XP_036015735.1  pleckstrin homology-like domain family B member 2 isoform X17

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:584847
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:10881192
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      TIGR02168
      Location:7121053
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    8. XM_006521929.4XP_006521992.1  pleckstrin homology-like domain family B member 2 isoform X11

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG0419
      Location:6281094
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      COG1196
      Location:584847
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11351239
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    9. XM_006521927.4XP_006521990.1  pleckstrin homology-like domain family B member 2 isoform X8

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG0419
      Location:6281119
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      COG1196
      Location:584847
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11601264
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    10. XM_011245859.3XP_011244161.1  pleckstrin homology-like domain family B member 2 isoform X3

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:584847
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:12211325
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam15921
      Location:6421172
      CCDC158; Coiled-coil domain-containing protein 158
    11. XM_006521920.4XP_006521983.1  pleckstrin homology-like domain family B member 2 isoform X1

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:584847
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:12441348
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:11391207
      DUF5401; Family of unknown function (DUF5401)
    12. XM_030249019.1XP_030104879.1  pleckstrin homology-like domain family B member 2 isoform X2

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:580843
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:12401344
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam00769
      Location:11321205
      ERM; Ezrin/radixin/moesin family
    13. XM_006521925.5XP_006521988.1  pleckstrin homology-like domain family B member 2 isoform X6

      See identical proteins and their annotated locations for XP_006521988.1

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:539802
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11991303
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:10941162
      DUF5401; Family of unknown function (DUF5401)
    14. XM_006521922.5XP_006521985.1  pleckstrin homology-like domain family B member 2 isoform X4

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:550813
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:12101314
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:11051173
      DUF5401; Family of unknown function (DUF5401)
    15. XM_036159837.1XP_036015730.1  pleckstrin homology-like domain family B member 2 isoform X9

      Conserved Domains (3) summary
      COG1196
      Location:575767
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11561260
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:10481115
      DUF5401; Family of unknown function (DUF5401)
    16. XM_006521924.5XP_006521987.1  pleckstrin homology-like domain family B member 2 isoform X6

      See identical proteins and their annotated locations for XP_006521987.1

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:539802
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11991303
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:10941162
      DUF5401; Family of unknown function (DUF5401)
    17. XM_036159839.1XP_036015732.1  pleckstrin homology-like domain family B member 2 isoform X13

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      TIGR00618
      Location:5341081
      sbcc; exonuclease SbcC
      COG1196
      Location:586778
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11061210
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
    18. XM_036159843.1XP_036015736.1  pleckstrin homology-like domain family B member 2 isoform X18

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:575796
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:10471151
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:9391006
      DUF5401; Family of unknown function (DUF5401)
    19. XM_036159840.1XP_036015733.1  pleckstrin homology-like domain family B member 2 isoform X14

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (4) summary
      TIGR00618
      Location:5231070
      sbcc; exonuclease SbcC
      COG1196
      Location:575767
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:10951199
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:9871054
      DUF5401; Family of unknown function (DUF5401)
    20. XM_036159841.1XP_036015734.1  pleckstrin homology-like domain family B member 2 isoform X16

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:539802
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:10901194
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:9821049
      DUF5401; Family of unknown function (DUF5401)
    21. XM_036159838.1XP_036015731.1  pleckstrin homology-like domain family B member 2 isoform X12

      UniProtKB/TrEMBL
      D3Z069
      Conserved Domains (3) summary
      COG1196
      Location:539802
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd14673
      Location:11151219
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      pfam17380
      Location:10071074
      DUF5401; Family of unknown function (DUF5401)
    22. XM_036159844.1XP_036015737.1  pleckstrin homology-like domain family B member 2 isoform X19

      Conserved Domains (3) summary
      cd14673
      Location:568672
      PH_PHLDB1_2; Pleckstrin homology-like domain-containing family B member 2 pleckstrin homology (PH) domain
      TIGR02168
      Location:30180
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam17380
      Location:460527
      DUF5401; Family of unknown function (DUF5401)