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    1700011L22Rik RIKEN cDNA 1700011L22 gene [ Mus musculus (house mouse) ]

    Gene ID: 67687, updated on 5-Mar-2024

    Summary

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    Official Symbol
    1700011L22Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700011L22 geneprovided by MGI
    Primary source
    MGI:MGI:1914937
    See related
    Ensembl:ENSMUSG00000031682 AllianceGenome:MGI:1914937
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C4orf51 (chromosome 4 open reading frame 51). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 103.3) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    8 C1; 8 37.48 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (79937059..79975212, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (79210430..79248663, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_22004 Neighboring gene STARR-positive B cell enhancer ABC_E8250 Neighboring gene predicted gene, 22044 Neighboring gene zinc finger protein 827 Neighboring gene predicted gene, 30271 Neighboring gene predicted gene, 30329 Neighboring gene methylmalonic aciduria (cobalamin deficiency) type A Neighboring gene predicted gene 4890

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C4orf51 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026315.1 → NP_080591.1  uncharacterized protein C4orf51 homolog

      See identical proteins and their annotated locations for NP_080591.1

      Status: VALIDATED

      Source sequence(s)
      AC101790
      Consensus CDS
      CCDS52605.1
      UniProtKB/Swiss-Prot
      G3X910, Q9DAF8
      Related
      ENSMUSP00000034109.5, ENSMUST00000034109.6
      Conserved Domains (1) summary
      pfam15849
      Location:1 → 174
      DUF4722; Domain of unknown function (DUF4722)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      79937059..79975212 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011248492.3 → XP_011246794.1  uncharacterized protein C4orf51 homolog isoform X1

      Conserved Domains (1) summary
      pfam15849
      Location:1 → 124
      DUF4722; Domain of unknown function (DUF4722)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DAF8.2 GenPept UniProtKB/Swiss-Prot:Q9DAF8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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