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    Stau2 staufen double-stranded RNA binding protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 29819, updated on 21-Apr-2024

    Summary

    Official Symbol
    Stau2provided by MGI
    Official Full Name
    staufen double-stranded RNA binding protein 2provided by MGI
    Primary source
    MGI:MGI:1352508
    See related
    Ensembl:ENSMUSG00000025920 AllianceGenome:MGI:1352508
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable several functions, including Hsp70 protein binding activity; kinesin binding activity; and mitogen-activated protein kinase binding activity. Predicted to be involved in several processes, including anterograde dendritic transport of messenger ribonucleoprotein complex; positive regulation of long-term synaptic depression; and positive regulation of nervous system development. Predicted to be located in several cellular components, including cytoplasmic stress granule; dendritic shaft; and nuclear membrane. Predicted to be part of messenger ribonucleoprotein complex. Is expressed in several structures, including central nervous system; olfactory epithelium; retina; submandibular gland primordium; and tooth. Orthologous to human STAU2 (staufen double-stranded RNA binding protein 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in CNS E18 (RPKM 14.6), cortex adult (RPKM 11.5) and 14 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    1 A3; 1 5.05 cM
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (16299027..16591228, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (16228803..16520332, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:16094431-16094614 Neighboring gene retinol dehydrogenase 10 (all-trans) Neighboring gene ribosomal protein L7 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:16167808-16168008 Neighboring gene RIKEN cDNA C130013N14 gene Neighboring gene predicted gene 7568 Neighboring gene ubiquitin-conjugating enzyme E2W (putative) Neighboring gene STARR-positive B cell enhancer ABC_E4305 Neighboring gene STARR-positive B cell enhancer ABC_E5743 Neighboring gene elongin C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1) 
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables Hsp70 protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables double-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables double-stranded RNA binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables kinesin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables mitogen-activated protein kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ribosome binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in axon ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytoplasmic stress granule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasmic stress granule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendritic shaft ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    part_of messenger ribonucleoprotein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in neuronal cell body IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    double-stranded RNA-binding protein Staufen homolog 2
    Names
    staufen (RNA binding protein) homolog 2
    staufen 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111272.1NP_001104742.1  double-stranded RNA-binding protein Staufen homolog 2 isoform 2

      See identical proteins and their annotated locations for NP_001104742.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate segment in the 5' end, compared to variant 1. This difference causes translation initiation at an upstream AUG and a protein (isoform 2) with a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      AK031102, BI987531, BY290411, CN665159
      Consensus CDS
      CCDS48223.1
      UniProtKB/TrEMBL
      E2QRQ3
      Related
      ENSMUSP00000027052.7, ENSMUST00000027052.13
      Conserved Domains (5) summary
      pfam16482
      Location:433491
      Staufen_C; Staufen C-terminal domain
      cd19882
      Location:66147
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:174240
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:272357
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cl00054
      Location:638
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    2. NM_001347044.1NP_001333973.1  double-stranded RNA-binding protein Staufen homolog 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC115952, AC116695, AC162448
      Consensus CDS
      CCDS83528.1
      UniProtKB/TrEMBL
      D3Z6D2, E2QRQ3
      Related
      ENSMUSP00000122410.3, ENSMUST00000128957.9
    3. NM_001347045.1NP_001333974.1  double-stranded RNA-binding protein Staufen homolog 2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC115952, AC116695, AC162448
      Consensus CDS
      CCDS83529.1
      UniProtKB/TrEMBL
      E2QRQ3
      Related
      ENSMUSP00000124303.2, ENSMUST00000162007.8
      Conserved Domains (5) summary
      pfam16482
      Location:433479
      Staufen_C; Staufen C-terminal domain
      cd19882
      Location:66147
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:174240
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:272357
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cl00054
      Location:638
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    4. NM_025303.3NP_079579.2  double-stranded RNA-binding protein Staufen homolog 2 isoform 3

      See identical proteins and their annotated locations for NP_079579.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has multiple differences in the presence and absence of exons, compared to variant 1. These differences produce a unique 5' UTR and cause translation initiation at a downstream start codon, compared to variant 1. The encoded protein (isoform 3) is shorter than isoform 1.
      Source sequence(s)
      AC115952, AC116695, AC162448, AC167117
      Consensus CDS
      CCDS14831.2
      UniProtKB/Swiss-Prot
      Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
      UniProtKB/TrEMBL
      E2QRQ3
      Related
      ENSMUSP00000124505.2, ENSMUST00000162751.8
      Conserved Domains (5) summary
      pfam16482
      Location:465523
      Staufen_C; Staufen C-terminal domain
      cd19880
      Location:370
      DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19882
      Location:98179
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:206272
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:304389
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      16299027..16591228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006495532.5XP_006495595.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X3

      See identical proteins and their annotated locations for XP_006495595.1

      UniProtKB/TrEMBL
      E2QRQ3
      Related
      ENSMUSP00000123827.2, ENSMUST00000162435.8
      Conserved Domains (5) summary
      pfam16482
      Location:433491
      Staufen_C; Staufen C-terminal domain
      cd19882
      Location:66147
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:174240
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:272357
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cl00054
      Location:638
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    2. XM_006495528.5XP_006495591.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X1

      See identical proteins and their annotated locations for XP_006495591.1

      UniProtKB/Swiss-Prot
      Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:465523
      Staufen_C; Staufen C-terminal domain
      cd19880
      Location:370
      DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19882
      Location:98179
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:206272
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:304389
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
    3. XM_011238390.3XP_011236692.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X4

      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:465511
      Staufen_C; Staufen C-terminal domain
      cd19880
      Location:370
      DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19882
      Location:98179
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:206272
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:304389
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
    4. XM_017321109.3XP_017176598.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X5

      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:433479
      Staufen_C; Staufen C-terminal domain
      cd19882
      Location:66147
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:174240
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:272357
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cl00054
      Location:638
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    5. XM_017321102.3XP_017176591.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X1

      UniProtKB/Swiss-Prot
      Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:465523
      Staufen_C; Staufen C-terminal domain
      cd19880
      Location:370
      DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19882
      Location:98179
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:206272
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:304389
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
    6. XM_011238387.2XP_011236689.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X1

      See identical proteins and their annotated locations for XP_011236689.1

      UniProtKB/Swiss-Prot
      Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:465523
      Staufen_C; Staufen C-terminal domain
      cd19880
      Location:370
      DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19882
      Location:98179
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:206272
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:304389
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
    7. XM_036165647.1XP_036021540.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X3

      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:433491
      Staufen_C; Staufen C-terminal domain
      cd19882
      Location:66147
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:174240
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:272357
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cl00054
      Location:638
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    8. XM_036165648.1XP_036021541.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X3

      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:433491
      Staufen_C; Staufen C-terminal domain
      cd19882
      Location:66147
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:174240
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:272357
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cl00054
      Location:638
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    9. XM_011238389.3XP_011236691.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X3

      See identical proteins and their annotated locations for XP_011236691.1

      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:433491
      Staufen_C; Staufen C-terminal domain
      cd19882
      Location:66147
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:174240
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:272357
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cl00054
      Location:638
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    10. XM_030254814.2XP_030110674.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X1

      UniProtKB/Swiss-Prot
      Q8BSY8, Q8CJ66, Q8CJ67, Q8R175, Q91Z19, Q9D5N7
      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:465523
      Staufen_C; Staufen C-terminal domain
      cd19880
      Location:370
      DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19882
      Location:98179
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:206272
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:304389
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
    11. XM_011238388.3XP_011236690.1  double-stranded RNA-binding protein Staufen homolog 2 isoform X2

      UniProtKB/TrEMBL
      E2QRQ3
      Conserved Domains (5) summary
      pfam16482
      Location:465512
      Staufen_C; Staufen C-terminal domain
      cd19880
      Location:370
      DSRM_STAU2_rpt1; first double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19882
      Location:98179
      DSRM_STAU2_rpt2; second double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19884
      Location:206272
      DSRM_STAU2_rpt3; third double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins
      cd19886
      Location:304389
      DSRM_STAU2_rpt4; fourth double-stranded RNA binding motif of double-stranded RNA-binding protein Staufen homolog 2 (Staufen 2) and similar proteins