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    Fam163a family with sequence similarity 163, member A [ Mus musculus (house mouse) ]

    Gene ID: 329274, updated on 21-Apr-2024

    Summary

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    Official Symbol
    Fam163aprovided by MGI
    Official Full Name
    family with sequence similarity 163, member Aprovided by MGI
    Primary source
    MGI:MGI:3618859
    See related
    Ensembl:ENSMUSG00000015484 AllianceGenome:MGI:3618859
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A230106N23Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in retina ganglion cell layer and retina layer. Orthologous to human FAM163A (family with sequence similarity 163 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in frontal lobe adult (RPKM 2.6), kidney adult (RPKM 2.4) and 13 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    1 G3; 1 67.71 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (155951702..156033027, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (156075956..156205453, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene torsin A interacting protein 1 Neighboring gene predicted gene, 51653 Neighboring gene STARR-seq mESC enhancer starr_02728 Neighboring gene torsin A interacting protein 2 Neighboring gene STARR-seq mESC enhancer starr_02733 Neighboring gene predicted gene, 30472 Neighboring gene STARR-seq mESC enhancer starr_02734 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:158194711-158194894 Neighboring gene STARR-seq mESC enhancer starr_02735 Neighboring gene tudor domain containing 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. MEGF10 and MEGF11 mediate homotypic interactions required for mosaic spacing of retinal neurons. Kay JN, et al. Nature, 2012 Mar 11. PMID 22407321, Free PMC Article
    2. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (4) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM163A
    Names
    cebelin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177838.3 → NP_808506.1  protein FAM163A

      See identical proteins and their annotated locations for NP_808506.1

      Status: VALIDATED

      Source sequence(s)
      AC159964, AK039197, BB084026
      Consensus CDS
      CCDS15390.1
      UniProtKB/Swiss-Prot
      Q8CAA5
      UniProtKB/TrEMBL
      A9ZNB6
      Related
      ENSMUSP00000015628.4, ENSMUST00000015628.4
      Conserved Domains (1) summary
      pfam15069
      Location:1 → 167
      FAM163; FAM163 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      155951702..156033027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321284.3 → XP_017176773.1  protein FAM163A isoform X1

      UniProtKB/Swiss-Prot
      Q8CAA5
      UniProtKB/TrEMBL
      A9ZNB6
      Conserved Domains (1) summary
      pfam15069
      Location:1 → 167
      FAM163; FAM163 family

    2. XM_017321283.3 → XP_017176772.1  protein FAM163A isoform X1

      UniProtKB/Swiss-Prot
      Q8CAA5
      UniProtKB/TrEMBL
      A9ZNB6
      Conserved Domains (1) summary
      pfam15069
      Location:1 → 167
      FAM163; FAM163 family

    3. XM_017321282.3 → XP_017176771.1  protein FAM163A isoform X1

      UniProtKB/Swiss-Prot
      Q8CAA5
      UniProtKB/TrEMBL
      A9ZNB6
      Conserved Domains (1) summary
      pfam15069
      Location:1 → 167
      FAM163; FAM163 family

    4. XM_036165924.1 → XP_036021817.1  protein FAM163A isoform X1

      UniProtKB/Swiss-Prot
      Q8CAA5
      UniProtKB/TrEMBL
      A9ZNB6
      Conserved Domains (1) summary
      pfam15069
      Location:1 → 167
      FAM163; FAM163 family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CAA5.1 GenPept UniProtKB/Swiss-Prot:Q8CAA5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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