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    Teddm3 transmembrane epididymal family member 3 [ Mus musculus (house mouse) ]

    Gene ID: 66561, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Teddm3provided by MGI
    Official Full Name
    transmembrane epididymal family member 3provided by MGI
    Primary source
    MGI:MGI:1913811
    See related
    Ensembl:ENSMUSG00000090356 AllianceGenome:MGI:1913811
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310042E22Rik
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    Genomic context

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    Location:
    16 B1; 16 12.61 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (20971409..20972694, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (21152659..21153944, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene 9697 Neighboring gene STARR-seq mESC enhancer starr_40350 Neighboring gene zinc finger, CCHC domain containing 6 pseudogene Neighboring gene STARR-seq mESC enhancer starr_40352 Neighboring gene STARR-seq mESC enhancer starr_40353 Neighboring gene STARR-seq mESC enhancer starr_40354 Neighboring gene STARR-seq mESC enhancer starr_40355 Neighboring gene STARR-seq mESC enhancer starr_40356 Neighboring gene STARR-seq mESC enhancer starr_40357 Neighboring gene STARR-seq mESC enhancer starr_40358 Neighboring gene Eph receptor B3 Neighboring gene predicted gene, 16863 Neighboring gene microRNA 7680

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC144564, MGC144565

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane epididymal family member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025634.3 → NP_079910.1  transmembrane epididymal family member 3

      See identical proteins and their annotated locations for NP_079910.1

      Status: VALIDATED

      Source sequence(s)
      AK009751, AK010016
      Consensus CDS
      CCDS79440.1
      UniProtKB/TrEMBL
      Q9CQH1, Q9D705
      Related
      ENSMUSP00000141078.2, ENSMUST00000170665.3
      Conserved Domains (1) summary
      pfam04819
      Location:136 → 247
      DUF716; Family of unknown function (DUF716)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      20971409..20972694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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