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    2310022A10Rik RIKEN cDNA 2310022A10 gene [ Mus musculus (house mouse) ]

    Gene ID: 66367, updated on 5-Mar-2024

    Summary

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    Official Symbol
    2310022A10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310022A10 geneprovided by MGI
    Primary source
    MGI:MGI:1913617
    See related
    Ensembl:ENSMUSG00000049643 AllianceGenome:MGI:1913617
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human C19orf47 (chromosome 19 open reading frame 47). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in heart adult (RPKM 19.9), thymus adult (RPKM 16.0) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    7 A3; 7 15.93 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (27252482..27281524)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (27553243..27582099)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4910 Neighboring gene predicted gene 15541 Neighboring gene periaxin Neighboring gene homeodomain interacting protein kinase 4 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28326448-28326635 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28330144-28330331 Neighboring gene phospholipase D family member 3 Neighboring gene predicted gene, 45975 Neighboring gene STARR-seq mESC enhancer starr_18371 Neighboring gene STARR-seq mESC enhancer starr_18372 Neighboring gene STARR-positive B cell enhancer ABC_E6525 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28376489-28376676 Neighboring gene STARR-positive B cell enhancer ABC_E11346 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:28377425-28377608 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene thymoma viral proto-oncogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
    2. Transcription factor Foxp3 and its protein partners form a complex regulatory network. Rudra D, et al. Nat Immunol, 2012 Oct. PMID 22922362, Free PMC Article
    3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C19orf47 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001122767.1 → NP_001116239.1  uncharacterized protein C19orf47 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at a downstream in-frame ATG and result in an isoform (2) with a distinct C-terminus and shorter N-terminus when compared to isoform 1.
      Source sequence(s)
      AK077369, BQ560353, BU555303
      UniProtKB/TrEMBL
      A0A0R4J2B5
      Related
      ENSMUSP00000139423.2, ENSMUST00000187032.2
      Conserved Domains (1) summary
      cd09531
      Location:8 → 72
      SAM_CS047; SAM domain of CS047 subfamily

    2. NM_001374792.1 → NP_001361721.1  uncharacterized protein C19orf47 homolog isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC074312, AC158304
      Consensus CDS
      CCDS90190.1
      UniProtKB/TrEMBL
      A0A087WRI8, A0A0R4J2B5
      Related
      ENSMUSP00000140651.2, ENSMUST00000187960.7
      Conserved Domains (2) summary
      pfam17740
      Location:119 → 366
      DUF5577; Family of unknown function (DUF5577)
      pfam18017
      Location:27 → 110
      SAM_4; SAM domain (Sterile alpha motif)

    3. NM_175107.5 → NP_780316.3  uncharacterized protein C19orf47 homolog isoform 1

      See identical proteins and their annotated locations for NP_780316.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AK077369, BB853451, BE854222, BQ560353, BU555303, BX522780
      Consensus CDS
      CCDS21026.1
      UniProtKB/Swiss-Prot
      Q3US50, Q8BVL8, Q8C1M9, Q8R3Y5
      UniProtKB/TrEMBL
      G5E8E3
      Related
      ENSMUSP00000066803.8, ENSMUST00000067386.14
      Conserved Domains (1) summary
      cd09531
      Location:34 → 98
      SAM_CS047; SAM domain of CS047 subfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      27252482..27281524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153351.1 → XP_036009244.1  uncharacterized protein C19orf47 homolog isoform X1

      UniProtKB/TrEMBL
      A0A087WRI8, A0A0R4J2B5
      Conserved Domains (2) summary
      pfam17740
      Location:119 → 366
      DUF5577; Family of unknown function (DUF5577)
      pfam18017
      Location:27 → 110
      SAM_4; SAM domain (Sterile alpha motif)

    2. XM_017312231.2 → XP_017167720.1  uncharacterized protein C19orf47 homolog isoform X2

      Conserved Domains (2) summary
      pfam17740
      Location:119 → 163
      DUF5577; Family of unknown function (DUF5577)
      pfam18017
      Location:27 → 110
      SAM_4; SAM domain (Sterile alpha motif)

    RNA

    1. XR_391092.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8R3Y5.2 GenPept UniProtKB/Swiss-Prot:Q8R3Y5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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