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    Apoa5 apolipoprotein A-V [ Mus musculus (house mouse) ]

    Gene ID: 66113, updated on 5-Mar-2024

    Summary

    Official Symbol
    Apoa5provided by MGI
    Official Full Name
    apolipoprotein A-Vprovided by MGI
    Primary source
    MGI:MGI:1913363
    See related
    Ensembl:ENSMUSG00000032079 AllianceGenome:MGI:1913363
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    RAP3; Apoav; 1300007O05Rik
    Summary
    Predicted to enable several functions, including cholesterol binding activity; enzyme activator activity; and heparin binding activity. Involved in acylglycerol homeostasis. Acts upstream of or within triglyceride metabolic process and triglyceride-rich lipoprotein particle remodeling. Predicted to be located in extracellular space. Predicted to be part of chylomicron; high-density lipoprotein particle; and very-low-density lipoprotein particle. Is expressed in lung. Human ortholog(s) of this gene implicated in cerebral infarction; coronary artery disease; familial hyperlipidemia (multiple); and type 2 diabetes mellitus. Orthologous to human APOA5 (apolipoprotein A5). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward liver adult (RPKM 678.7) See more
    Orthologs
    NEW
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    Genomic context

    See Apoa5 in Genome Data Viewer
    Location:
    9 A5.2; 9 25.37 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (46179906..46183219)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (46268608..46271921)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene apolipoprotein C-III Neighboring gene apolipoprotein A-IV Neighboring gene STARR-seq mESC enhancer starr_24024 Neighboring gene STARR-positive B cell enhancer ABC_E1112 Neighboring gene ZPR1 zinc finger Neighboring gene STARR-positive B cell enhancer ABC_E9758 Neighboring gene BUD13 homolog Neighboring gene STARR-seq mESC enhancer starr_24026

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cholesterol transfer activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables enzyme activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables heparin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables lipase activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables lipase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables lipid binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables lipoprotein lipase activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables lipoprotein particle receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables low-density lipoprotein particle receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylcholine binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylcholine-sterol O-acyltransferase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables phospholipid binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in acylglycerol homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in acylglycerol homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in acylglycerol homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cholesterol efflux IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cholesterol homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cholesterol metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in lipid transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in lipoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in phospholipid efflux IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of fatty acid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of lipid catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of lipoprotein lipase activity ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of triglyceride catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of very-low-density lipoprotein particle remodeling ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in triglyceride catabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in triglyceride homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within triglyceride metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in triglyceride metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within triglyceride-rich lipoprotein particle remodeling IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of chylomicron IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of chylomicron ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular region ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in extracellular vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of high-density lipoprotein particle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of high-density lipoprotein particle ISO
    Inferred from Sequence Orthology
    more info
     
    part_of very-low-density lipoprotein particle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of very-low-density lipoprotein particle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    apolipoprotein A-V
    Names
    apolipoprotein A5
    regeneration-associated protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001348095.1NP_001335024.1  apolipoprotein A-V precursor

      Status: VALIDATED

      Source sequence(s)
      AC164105, AK050280
      Consensus CDS
      CCDS23143.1
      UniProtKB/Swiss-Prot
      Q8C7G5, Q91X90, Q99P64
      Related
      ENSMUSP00000113413.2, ENSMUST00000121598.8
      Conserved Domains (1) summary
      pfam01442
      Location:65242
      Apolipoprotein; Apolipoprotein A1/A4/E domain
    2. NM_080434.4NP_536682.2  apolipoprotein A-V precursor

      See identical proteins and their annotated locations for NP_536682.2

      Status: VALIDATED

      Source sequence(s)
      AC164105, AK050280
      Consensus CDS
      CCDS23143.1
      UniProtKB/Swiss-Prot
      Q8C7G5, Q91X90, Q99P64
      Related
      ENSMUSP00000034584.4, ENSMUST00000034584.4
      Conserved Domains (1) summary
      pfam01442
      Location:65242
      Apolipoprotein; Apolipoprotein A1/A4/E domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      46179906..46183219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)