U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Cystm1 cysteine-rich transmembrane module containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 66060, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Cystm1provided by MGI
    Official Full Name
    cysteine-rich transmembrane module containing 1provided by MGI
    Primary source
    MGI:MGI:1913310
    See related
    Ensembl:ENSMUSG00000046727 AllianceGenome:MGI:1913310
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    0610010O12Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CYSTM1 (cysteine rich transmembrane module containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in stomach adult (RPKM 897.0), duodenum adult (RPKM 540.0) and 7 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    18 B2; 18 19.46 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (36481677..36536032)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (36348624..36402979)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene purine rich element binding protein A Neighboring gene IgA inducing protein Neighboring gene STARR-positive B cell enhancer ABC_E1952 Neighboring gene predicted gene, 41696 Neighboring gene STARR-seq mESC enhancer starr_44284 Neighboring gene prefoldin 1 Neighboring gene STARR-seq mESC enhancer starr_44287 Neighboring gene STARR-seq mESC enhancer starr_44288 Neighboring gene heparin-binding EGF-like growth factor Neighboring gene predicted gene, 41698

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 
    • Endonuclease-mediated (1) 

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cysteine-rich and transmembrane domain-containing protein 1
    Names
    UPF0467 protein C5orf32 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081365.1 → NP_001074834.1  cysteine-rich and transmembrane domain-containing protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC130714
      Consensus CDS
      CCDS37770.1
      UniProtKB/TrEMBL
      D3YWV2, F5H8M7
      Related
      ENSMUSP00000129683.2, ENSMUST00000152804.9

    2. NM_001368637.1 → NP_001355566.1  cysteine-rich and transmembrane domain-containing protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      BC028765
      Consensus CDS
      CCDS89221.1
      UniProtKB/Swiss-Prot
      Q8BMU1, Q8K353
      UniProtKB/TrEMBL
      D3YVS7
      Related
      ENSMUSP00000051708.4, ENSMUST00000050584.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      36481677..36536032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_025328.1: Suppressed sequence

      Description
      NM_025328.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8K353.1 GenPept UniProtKB/Swiss-Prot:Q8K353

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous