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    1700123O20Rik RIKEN cDNA 1700123O20 gene [ Mus musculus (house mouse) ]

    Gene ID: 58248, updated on 21-Apr-2024

    Summary

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    Official Symbol
    1700123O20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700123O20 geneprovided by MGI
    Primary source
    MGI:MGI:1920893
    See related
    Ensembl:ENSMUSG00000040822 AllianceGenome:MGI:1920893
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MNCb-2990
    Summary
    Predicted to be located in cytosol and mitochondrion. Orthologous to human C14orf119 (chromosome 14 open reading frame 119). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 20.3), limb E14.5 (RPKM 18.6) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    14 C2; 14 27.89 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (54923628..54928201)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (54686171..54690742)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene apoptotic chromatin condensation inducer 1 Neighboring gene RIKEN cDNA 4930579G18 gene Neighboring gene STARR-positive B cell enhancer ABC_E1473 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E96 Neighboring gene ciliated left-right organizer metallopeptidase Neighboring gene predicted gene, 53859

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C14orf119 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021437.2 → NP_067412.1  uncharacterized protein C14orf119 homolog

      See identical proteins and their annotated locations for NP_067412.1

      Status: VALIDATED

      Source sequence(s)
      CT009512
      Consensus CDS
      CCDS27099.1
      UniProtKB/Swiss-Prot
      Q921Q2, Q9JJ93
      UniProtKB/TrEMBL
      Q3TC60
      Related
      ENSMUSP00000047702.7, ENSMUST00000038539.8
      Conserved Domains (1) summary
      pfam14969
      Location:38 → 135
      DUF4508; Domain of unknown function (DUF4508)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      54923628..54928201
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158774.1 → XP_036014667.1  uncharacterized protein C14orf119 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q921Q2, Q9JJ93
      UniProtKB/TrEMBL
      Q3TC60
      Conserved Domains (1) summary
      pfam14969
      Location:38 → 135
      DUF4508; Domain of unknown function (DUF4508)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9JJ93.1 GenPept UniProtKB/Swiss-Prot:Q9JJ93

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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