U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    BC051019 cDNA sequence BC051019 [ Mus musculus (house mouse) ]

    Gene ID: 57355, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    BC051019provided by MGI
    Official Full Name
    cDNA sequence BC051019provided by MGI
    Primary source
    MGI:MGI:1928824
    See related
    Ensembl:ENSMUSG00000031022 AllianceGenome:MGI:1928824
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D7H11orf16; ICRFP703B1614Q5.5
    Summary
    Orthologous to human C11orf16 (chromosome 11 open reading frame 16). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in lung adult (RPKM 6.9), bladder adult (RPKM 5.4) and 2 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    7 E3; 7 57.45 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (109311388..109323141, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (109712181..109723934, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 24888 Neighboring gene ribosomal protein L27A Neighboring gene DENN domain containing 2B Neighboring gene STARR-seq mESC enhancer starr_19802 Neighboring gene STARR-seq mESC enhancer starr_19804 Neighboring gene STARR-positive B cell enhancer ABC_E4965 Neighboring gene VISTA enhancer mm1407 Neighboring gene A kinase interacting protein 1 Neighboring gene predicted gene, 51493 Neighboring gene achaete-scute family bHLH transcription factor 3 Neighboring gene TMEM9 domain family, member B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7. Amid C, et al. Cytogenet Cell Genet, 2001. PMID 11528127
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C11orf16 homolog
    Names
    ICRFP703N2430Q5.5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040700.2 → NP_001035790.1  uncharacterized protein C11orf16 homolog

      See identical proteins and their annotated locations for NP_001035790.1

      Status: PROVISIONAL

      Source sequence(s)
      BC051019
      Consensus CDS
      CCDS40084.1
      UniProtKB/Swiss-Prot
      Q80XE7, Q9JJR6
      UniProtKB/TrEMBL
      Q3UQ01
      Related
      ENSMUSP00000102346.3, ENSMUST00000106735.9
      Conserved Domains (1) summary
      pfam15057
      Location:85 → 223
      DUF4537; Domain of unknown function (DUF4537)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      109311388..109323141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508052.4 → XP_006508115.1  uncharacterized protein C11orf16 homolog isoform X1

      See identical proteins and their annotated locations for XP_006508115.1

      UniProtKB/Swiss-Prot
      Q80XE7, Q9JJR6
      UniProtKB/TrEMBL
      Q3UQ01
      Related
      ENSMUSP00000033334.5, ENSMUST00000033334.5
      Conserved Domains (1) summary
      pfam15057
      Location:85 → 223
      DUF4537; Domain of unknown function (DUF4537)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_020609.2: Suppressed sequence

      Description
      NM_020609.2: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9JJR6.2 GenPept UniProtKB/Swiss-Prot:Q9JJR6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous