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    Nap1l3 nucleosome assembly protein 1-like 3 [ Mus musculus (house mouse) ]

    Gene ID: 54561, updated on 11-Apr-2024

    Summary

    Official Symbol
    Nap1l3provided by MGI
    Official Full Name
    nucleosome assembly protein 1-like 3provided by MGI
    Primary source
    MGI:MGI:1859565
    See related
    Ensembl:ENSMUSG00000055733 AllianceGenome:MGI:1859565
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MB20
    Summary
    Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in cytoplasm. Predicted to be active in chromatin and nucleus. Is expressed in dorsal root ganglion; facial ganglion; glossopharyngeal ganglion; trigeminal ganglion; and vestibulo-cochlear ganglion. Orthologous to human NAP1L3 (nucleosome assembly protein 1 like 3). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    Location:
    X E3; X 49.81 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (121304257..121307082, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (122394560..122397385, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47871 Neighboring gene STARR-seq mESC enhancer starr_47872 Neighboring gene tripartite motif-containing 5 pseudogene Neighboring gene helicase-like transcription factor pseudogene Neighboring gene STARR-seq mESC enhancer starr_47873 Neighboring gene STARR-seq mESC enhancer starr_47874 Neighboring gene STARR-seq mESC enhancer starr_47875 Neighboring gene family with sequence similarity 133, member B pseudogene Neighboring gene STARR-seq mESC enhancer starr_47876 Neighboring gene nucleolin pseudogene

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in nucleosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    nucleosome assembly protein 1-like 3
    Names
    brain-specific protein MB20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138742.1NP_620081.1  nucleosome assembly protein 1-like 3

      See identical proteins and their annotated locations for NP_620081.1

      Status: VALIDATED

      Source sequence(s)
      BC020176
      Consensus CDS
      CCDS30372.1
      UniProtKB/Swiss-Prot
      B1AZU8, O54802, Q794H2
      Related
      ENSMUSP00000078453.5, ENSMUST00000079490.6
      Conserved Domains (2) summary
      pfam00956
      Location:352524
      NAP; Nucleosome assembly protein (NAP)
      cl08298
      Location:117157
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      121304257..121307082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)