Vsig10 V-set and immunoglobulin domain containing 10 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Vsig10provided by MGI
Official Full Name: V-set and immunoglobulin domain containing 10provided by MGI
Primary source: MGI:MGI:2448533
See related: Ensembl:ENSMUSG00000066894 AllianceGenome:MGI:2448533
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Orthologous to human VSIG10 (V-set and immunoglobulin domain containing 10). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Broad expression in colon adult (RPKM 29.0), large intestine adult (RPKM 13.0) and 15 other tissues See more
Orthologs: human all
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Genomic context

Location:: 5 F; 5 56.88 cM

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	5	NC_000071.7 (117457331..117493071)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	5	NC_000071.6 (117318476..117355007)

Chromosome 5 - NC_000071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: V-set and immunoglobulin domain-containing protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001033311.3 → NP_001028483.2 V-set and immunoglobulin domain-containing protein 10 precursor

See identical proteins and their annotated locations for NP_001028483.2

Status: VALIDATED

Source sequence(s)

AC110234, AK140339, BY082706, BY668205, CJ057085

Consensus CDS

CCDS19603.2

UniProtKB/Swiss-Prot

D3YX43

UniProtKB/TrEMBL

E9PVW4

Related

ENSMUSP00000107598.2, ENSMUST00000111967.8

Conserved Domains (3) summary

cd00096
Location:345 → 418

Ig; Immunoglobulin domain

smart00410
Location:341 → 421

IG_like; Immunoglobulin like

cl11960
Location:47 → 135

Ig; Immunoglobulin domain