Yipf1 Yip1 domain family, member 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Yipf1provided by MGI
Official Full Name: Yip1 domain family, member 1provided by MGI
Primary source: MGI:MGI:1915532
See related: Ensembl:ENSMUSG00000057375 AllianceGenome:MGI:1915532
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: C030002N13Rik
Summary: Predicted to enable small GTPase binding activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus subcompartment; nucleoplasm; and transport vesicle. Predicted to be active in Golgi apparatus. Orthologous to human YIPF1 (Yip1 domain family member 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in large intestine adult (RPKM 32.5), colon adult (RPKM 31.0) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 4 C7; 4 50.18 cM

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	4	NC_000070.7 (107149068..107217020)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	4	NC_000070.6 (107314223..107359823)

Chromosome 4 - NC_000070.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (1)
Endonuclease-mediated (2)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

NoName (e-PCR)
- UniSTS:234985

NoName (e-PCR)
- UniSTS:234988

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables small GTPase binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi apparatus	ISO Inferred from Sequence Orthology more info
located_in Golgi medial cisterna	ISO Inferred from Sequence Orthology more info
located_in Golgi trans cisterna	ISO Inferred from Sequence Orthology more info
located_in endosome	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
located_in plasma membrane	ISO Inferred from Sequence Orthology more info
located_in trans-Golgi network	ISO Inferred from Sequence Orthology more info
located_in transport vesicle	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: protein YIPF1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001205156.1 → NP_001192085.1 protein YIPF1 isoform 2

See identical proteins and their annotated locations for NP_001192085.1

Status: VALIDATED

Description

Transcript Variant: This variant (2) lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.

Source sequence(s)

AL626784, AL645723

UniProtKB/TrEMBL

A2A8S3

Related

ENSMUSP00000115626.2, ENSMUST00000139527.8

Conserved Domains (1) summary

pfam04893
Location:65 → 241

Yip1; Yip1 domain
NM_145550.3 → NP_663525.1 protein YIPF1 isoform 1

See identical proteins and their annotated locations for NP_663525.1

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).

Source sequence(s)

AI303400, AK081205, BY204210

Consensus CDS

CCDS18437.1

UniProtKB/Swiss-Prot

Q3TZU1, Q91VU1

UniProtKB/TrEMBL

A2A8S3

Related

ENSMUSP00000075113.6, ENSMUST00000075693.12

Conserved Domains (1) summary

pfam04893
Location:100 → 277

Yip1; Yip1 domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000070.7 Reference GRCm39 C57BL/6J

Range

107149068..107217020

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_036164021.1 → XP_036019914.1 protein YIPF1 isoform X1

UniProtKB/Swiss-Prot

Q3TZU1, Q91VU1

UniProtKB/TrEMBL

A2A8S3

Conserved Domains (1) summary

pfam04893
Location:100 → 277

Yip1; Yip1 domain
XM_006502968.5 → XP_006503031.1 protein YIPF1 isoform X2

UniProtKB/TrEMBL

A2A8S3

Related

ENSMUSP00000114898.2, ENSMUST00000128284.8

Conserved Domains (1) summary

pfam04893
Location:86 → 268

Yip1; Yip1 domain