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    D030056L22Rik RIKEN cDNA D030056L22 gene [ Mus musculus (house mouse) ]

    Gene ID: 225995, updated on 5-Mar-2024

    Summary

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    Official Symbol
    D030056L22Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D030056L22 geneprovided by MGI
    Primary source
    MGI:MGI:3583960
    See related
    Ensembl:ENSMUSG00000047044 AllianceGenome:MGI:3583960
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C9orf40 (chromosome 9 open reading frame 40). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in ovary adult (RPKM 26.9), adrenal adult (RPKM 21.7) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See D030056L22Rik in Genome Data Viewer
    Location:
    19 B; 19 13.2 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (18690599..18695793)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (18713235..18718429)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7637 Neighboring gene nicotinamide riboside kinase 1 Neighboring gene STARR-positive B cell enhancer ABC_E9992 Neighboring gene carnosine N-methyltransferase 1 Neighboring gene STARR-seq mESC enhancer starr_45692 Neighboring gene STARR-positive B cell enhancer ABC_E3247 Neighboring gene predicted gene, 23238 Neighboring gene predicted gene, 41814 Neighboring gene transient receptor potential cation channel, subfamily M, member 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C9orf40 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001374130.1 → NP_001361059.1  uncharacterized protein C9orf40 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC134906
      UniProtKB/Swiss-Prot
      Q8BJJ5, Q8VCE4
      UniProtKB/TrEMBL
      Q3UMB2
      Related
      ENSMUSP00000108465.2, ENSMUST00000062753.3
      Conserved Domains (1) summary
      pfam15017
      Location:119 → 162
      WRNPLPNID; Putative WW-binding domain and destruction box

    2. NM_177640.4 → NP_808308.1  uncharacterized protein C9orf40 homolog isoform 2

      See identical proteins and their annotated locations for NP_808308.1

      Status: VALIDATED

      Source sequence(s)
      AC134906
      Consensus CDS
      CCDS29690.1
      UniProtKB/TrEMBL
      Q3U2A5
      Related
      ENSMUSP00000061933.8, ENSMUST00000055792.8
      Conserved Domains (1) summary
      pfam15017
      Location:118 → 161
      WRNPLPNID; Putative WW-binding domain and destruction box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      18690599..18695793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VCE4.1 GenPept UniProtKB/Swiss-Prot:Q8VCE4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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