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    Crisp2 cysteine-rich secretory protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 22024, updated on 5-Mar-2024

    Summary

    Official Symbol
    Crisp2provided by MGI
    Official Full Name
    cysteine-rich secretory protein 2provided by MGI
    Primary source
    MGI:MGI:98815
    See related
    Ensembl:ENSMUSG00000023930 AllianceGenome:MGI:98815
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tpx1; Tpx-1; GAPDL5; CRISP-2
    Summary
    Predicted to be involved in cell-cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human CRISP2 (cysteine rich secretory protein 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 326.9) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    Location:
    17 B2; 17 19.54 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (41075625..41105037, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (40764734..40794146, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene exocrine gland secreted peptide 3 Neighboring gene STARR-seq mESC enhancer starr_42547 Neighboring gene exocrine gland secreted peptide 1 Neighboring gene Rhesus blood group-associated A glycoprotein Neighboring gene STARR-seq mESC enhancer starr_42548 Neighboring gene STARR-seq mESC enhancer starr_42549 Neighboring gene cytochrome P450, family 2, subfamily ac, polypeptide 1, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3)  1 citation
    • Endonuclease-mediated (3) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in cell-cell adhesion ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    cysteine-rich secretory protein 2
    Names
    testis specific gene 1
    testis-specific protein TPX-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001204071.1NP_001191000.1  cysteine-rich secretory protein 2 precursor

      See identical proteins and their annotated locations for NP_001191000.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC135084, BC049615, CJ046590
      Consensus CDS
      CCDS28786.1
      UniProtKB/Swiss-Prot
      P16563
      Conserved Domains (2) summary
      cd05383
      Location:36171
      SCP_CRISP; SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a ...
      pfam08562
      Location:189243
      Crisp; Crisp
    2. NM_009420.2NP_033446.1  cysteine-rich secretory protein 2 precursor

      See identical proteins and their annotated locations for NP_033446.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC135084, BC049615
      Consensus CDS
      CCDS28786.1
      UniProtKB/Swiss-Prot
      P16563
      Related
      ENSMUSP00000024724.8, ENSMUST00000024724.14
      Conserved Domains (2) summary
      cd05383
      Location:36171
      SCP_CRISP; SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a ...
      pfam08562
      Location:189243
      Crisp; Crisp

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      41075625..41105037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524036.3XP_006524099.1  cysteine-rich secretory protein 2 isoform X1

      Conserved Domains (2) summary
      pfam08562
      Location:128182
      Crisp
      cl00133
      Location:1111
      CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family
    2. XM_030249644.1XP_030105504.1  cysteine-rich secretory protein 2 isoform X1

      Conserved Domains (2) summary
      pfam08562
      Location:128182
      Crisp
      cl00133
      Location:1111
      CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family