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    Tff2 trefoil factor 2 (spasmolytic protein 1) [ Mus musculus (house mouse) ]

    Gene ID: 21785, updated on 21-Apr-2024

    Summary

    Official Symbol
    Tff2provided by MGI
    Official Full Name
    trefoil factor 2 (spasmolytic protein 1)provided by MGI
    Primary source
    MGI:MGI:1306805
    See related
    Ensembl:ENSMUSG00000024028 AllianceGenome:MGI:1306805
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SP; mSP
    Summary
    Enables CXCR4 chemokine receptor binding activity. Acts upstream of or within several processes, including negative regulation of gastric acid secretion; negative regulation of macrophage activation; and positive regulation of ERK1 and ERK2 cascade. Located in extracellular space. Is expressed in several structures, including alimentary system; genitourinary system; liver; skeleton; and thymus. Orthologous to human TFF2 (trefoil factor 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in duodenum adult (RPKM 2097.9), stomach adult (RPKM 1770.2) and 1 other tissue See more
    Orthologs
    NEW
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    Genomic context

    Location:
    17 A3.3; 17 15.8 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (31360036..31363256, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (31141062..31144282, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5588 Neighboring gene ATP binding cassette subfamily G member 1 Neighboring gene STARR-seq mESC enhancer starr_42319 Neighboring gene STARR-positive B cell enhancer ABC_E7512 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:31214721-31214922 Neighboring gene trefoil factor 3, intestinal Neighboring gene predicted gene 15318 Neighboring gene trefoil factor 1 Neighboring gene transmembrane protease, serine 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3)  1 citation
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables CXCR4 chemokine receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables CXCR4 chemokine receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within calcium-mediated signaling IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in chemokine-mediated signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within chemokine-mediated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of establishment of localization in cell IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of gastric acid secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of macrophage activation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in maintenance of gastrointestinal epithelium IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of gastric acid secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within negative regulation of gastric acid secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of inflammatory response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of macrophage activation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of ERK1 and ERK2 cascade IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of cell population proliferation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within regulation of cell migration IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    trefoil factor 2
    Names
    spasmolytic polypeptide

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009363.3NP_033389.2  trefoil factor 2 precursor

      See identical proteins and their annotated locations for NP_033389.2

      Status: PROVISIONAL

      Source sequence(s)
      AK003093
      Consensus CDS
      CCDS37545.1
      UniProtKB/Swiss-Prot
      O08913, Q03404
      UniProtKB/TrEMBL
      Q9QX97
      Related
      ENSMUSP00000024826.8, ENSMUST00000024826.8
      Conserved Domains (2) summary
      smart00018
      Location:79124
      PD; P or trefoil or TFF domain
      pfam00088
      Location:3672
      Trefoil; Trefoil (P-type) domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      31360036..31363256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)