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    4933430I17Rik RIKEN cDNA 4933430I17 gene [ Mus musculus (house mouse) ]

    Gene ID: 214106, updated on 5-Mar-2024

    Summary

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    Official Symbol
    4933430I17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4933430I17 geneprovided by MGI
    Primary source
    MGI:MGI:3045314
    See related
    Ensembl:ENSMUSG00000058046 AllianceGenome:MGI:3045314
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    bN189G18.7
    Summary
    Orthologous to human C9orf43 (chromosome 9 open reading frame 43). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 1.5), CNS E11.5 (RPKM 0.5) and 13 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    4 B3; 4 33.17 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (62443541..62471270)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (62525304..62553033)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62186055-62186242 Neighboring gene aminolevulinate, delta-, dehydratase Neighboring gene polymerase (DNA directed), epsilon 3 (p17 subunit) Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:62213110-62213293 Neighboring gene STARR-positive B cell enhancer mm9_chr4:62222257-62222558 Neighboring gene regulator of G-protein signaling 3 Neighboring gene STARR-positive B cell enhancer mm9_chr4:62322547-62322847 Neighboring gene STARR-seq mESC enhancer starr_10430 Neighboring gene predicted gene, 52741 Neighboring gene STARR-seq mESC enhancer starr_10432 Neighboring gene predicted gene 11210 Neighboring gene predicted gene 11211

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C9orf43 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001356420.2 → NP_001343349.2  uncharacterized protein C9orf43 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL732594
      Conserved Domains (1) summary
      pfam15504
      Location:1 → 450
      DUF4647; Domain of unknown function (DUF4647)

    2. NM_001356421.2 → NP_001343350.2  uncharacterized protein C9orf43 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL732594
      Conserved Domains (1) summary
      pfam15504
      Location:1 → 450
      DUF4647; Domain of unknown function (DUF4647)

    3. NM_001356422.2 → NP_001343351.2  uncharacterized protein C9orf43 homolog isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL732594
      Conserved Domains (1) summary
      pfam15504
      Location:1 → 415
      DUF4647; Domain of unknown function (DUF4647)

    4. NM_001377106.1 → NP_001364035.1  uncharacterized protein C9orf43 homolog isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL732594
      Conserved Domains (1) summary
      pfam15504
      Location:1 → 322
      DUF4647; Domain of unknown function (DUF4647)

    5. NM_177607.4 → NP_808275.2  uncharacterized protein C9orf43 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL732594
      Consensus CDS
      CCDS18245.1
      UniProtKB/TrEMBL
      F6UZS4
      Related
      ENSMUSP00000050465.3, ENSMUST00000062145.2
      Conserved Domains (1) summary
      pfam15504
      Location:1 → 460
      DUF4647; Domain of unknown function (DUF4647)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      62443541..62471270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011249971.3 → XP_011248273.1  uncharacterized protein C9orf43 homolog isoform X2

      Conserved Domains (1) summary
      pfam15504
      Location:22 → 481
      DUF4647; Domain of unknown function (DUF4647)

    2. XM_030253385.2 → XP_030109245.1  uncharacterized protein C9orf43 homolog isoform X6

      Conserved Domains (1) summary
      pfam15504
      Location:22 → 388
      DUF4647; Domain of unknown function (DUF4647)

    3. XM_036163948.1 → XP_036019841.1  uncharacterized protein C9orf43 homolog isoform X7

      Conserved Domains (1) summary
      pfam15504
      Location:22 → 343
      DUF4647; Domain of unknown function (DUF4647)

    4. XM_030253384.2 → XP_030109244.1  uncharacterized protein C9orf43 homolog isoform X5

      Conserved Domains (1) summary
      pfam15504
      Location:22 → 436
      DUF4647; Domain of unknown function (DUF4647)

    5. XM_006537739.5 → XP_006537802.1  uncharacterized protein C9orf43 homolog isoform X4

      See identical proteins and their annotated locations for XP_006537802.1

      UniProtKB/TrEMBL
      F6UZS4
      Conserved Domains (1) summary
      pfam15504
      Location:1 → 460
      DUF4647; Domain of unknown function (DUF4647)

    6. XM_006537736.5 → XP_006537799.1  uncharacterized protein C9orf43 homolog isoform X1

      See identical proteins and their annotated locations for XP_006537799.1

      UniProtKB/TrEMBL
      Q8BHW4
      Conserved Domains (1) summary
      pfam15504
      Location:22 → 481
      DUF4647; Domain of unknown function (DUF4647)

    7. XM_036163947.1 → XP_036019840.1  uncharacterized protein C9orf43 homolog isoform X3

      UniProtKB/TrEMBL
      Q14AX1
      Conserved Domains (1) summary
      pfam15504
      Location:22 → 471
      DUF4647; Domain of unknown function (DUF4647)

    8. XM_030253387.2 → XP_030109247.1  uncharacterized protein C9orf43 homolog isoform X8

      Conserved Domains (1) summary
      pfam15504
      Location:1 → 323
      DUF4647; Domain of unknown function (DUF4647)

    9. XM_006537740.5 → XP_006537803.1  uncharacterized protein C9orf43 homolog isoform X4

      See identical proteins and their annotated locations for XP_006537803.1

      UniProtKB/TrEMBL
      F6UZS4
      Conserved Domains (1) summary
      pfam15504
      Location:1 → 460
      DUF4647; Domain of unknown function (DUF4647)

    RNA

    1. XR_003954905.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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