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    9330159F19Rik RIKEN cDNA 9330159F19 gene [ Mus musculus (house mouse) ]

    Gene ID: 212448, updated on 5-Mar-2024

    Summary

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    Official Symbol
    9330159F19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9330159F19 geneprovided by MGI
    Primary source
    MGI:MGI:3036239
    See related
    Ensembl:ENSMUSG00000004360 AllianceGenome:MGI:3036239
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in nervous system and sensory organ. Orthologous to human KIAA0408 (KIAA0408). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in CNS E18 (RPKM 22.1), whole brain E14.5 (RPKM 15.0) and 6 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    10 A4; 10 16.55 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (29074937..29106775)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (29198942..29230779)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene UPF0762 protein C6orf58 homolog Neighboring gene phosphatidylethanolamine-binding protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_26173 Neighboring gene STARR-seq mESC enhancer starr_26174 Neighboring gene MTCL family member 3 Neighboring gene STARR-seq mESC enhancer starr_26176 Neighboring gene predicted gene, 46218 Neighboring gene STARR-seq mESC enhancer starr_26177 Neighboring gene enoyl Coenzyme A hydratase domain containing 1 Neighboring gene STARR-positive B cell enhancer ABC_E6827 Neighboring gene ring finger protein 146 Neighboring gene predicted gene, 25596

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein KIAA0408 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162537.2 → NP_001156009.1  uncharacterized protein KIAA0408 homolog

      See identical proteins and their annotated locations for NP_001156009.1

      Status: VALIDATED

      Source sequence(s)
      AC153912, BC138279, CJ109378
      Consensus CDS
      CCDS48527.1
      UniProtKB/TrEMBL
      D3Z623
      Related
      ENSMUSP00000090291.5, ENSMUST00000092627.6
      Conserved Domains (1) summary
      pfam14818
      Location:16 → 149
      DUF4482; Domain of unknown function (DUF4482)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      29074937..29106775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017313869.3 → XP_017169358.1  uncharacterized protein KIAA0408 homolog isoform X1

      UniProtKB/TrEMBL
      D3Z623
      Conserved Domains (1) summary
      pfam14818
      Location:16 → 149
      DUF4482; Domain of unknown function (DUF4482)

    2. XM_006512646.3 → XP_006512709.1  uncharacterized protein KIAA0408 homolog isoform X1

      See identical proteins and their annotated locations for XP_006512709.1

      UniProtKB/TrEMBL
      D3Z623
      Conserved Domains (1) summary
      pfam14818
      Location:16 → 149
      DUF4482; Domain of unknown function (DUF4482)

    3. XM_017313870.3 → XP_017169359.1  uncharacterized protein KIAA0408 homolog isoform X1

      UniProtKB/TrEMBL
      D3Z623
      Conserved Domains (1) summary
      pfam14818
      Location:16 → 149
      DUF4482; Domain of unknown function (DUF4482)

    4. XM_006512649.3 → XP_006512712.1  uncharacterized protein KIAA0408 homolog isoform X1

      See identical proteins and their annotated locations for XP_006512712.1

      UniProtKB/TrEMBL
      D3Z623
      Related
      ENSMUSP00000151062.2, ENSMUST00000213489.2
      Conserved Domains (1) summary
      pfam14818
      Location:16 → 149
      DUF4482; Domain of unknown function (DUF4482)

    5. XM_036155721.1 → XP_036011614.1  uncharacterized protein KIAA0408 homolog isoform X1

      UniProtKB/TrEMBL
      D3Z623
      Conserved Domains (1) summary
      pfam14818
      Location:16 → 149
      DUF4482; Domain of unknown function (DUF4482)
    Nucleotide Protein Strain
    Heading Accession and Version

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