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    Ppp5c protein phosphatase 5, catalytic subunit [ Mus musculus (house mouse) ]

    Gene ID: 19060, updated on 21-Apr-2024

    Summary

    Official Symbol
    Ppp5cprovided by MGI
    Official Full Name
    protein phosphatase 5, catalytic subunitprovided by MGI
    Primary source
    MGI:MGI:102666
    See related
    Ensembl:ENSMUSG00000003099 AllianceGenome:MGI:102666
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PP5
    Summary
    Enables RNA binding activity and phosphoprotein phosphatase activity. Acts upstream of or within response to morphine. Located in cytosol. Orthologous to human PPP5C (protein phosphatase 5 catalytic subunit). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in colon adult (RPKM 54.8), cerebellum adult (RPKM 52.9) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    7 A2; 7 9.15 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (16738575..16761812, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (17004640..17027914, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:17575492-17575675 Neighboring gene PNMA family member 8C Neighboring gene coiled-coil domain containing 8 Neighboring gene hypoxia inducible factor 3, alpha subunit Neighboring gene STARR-seq mESC enhancer starr_18149 Neighboring gene pregnancy specific beta-1-glycoprotein 16 Neighboring gene predicted gene 45219

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ADP binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables ATP binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables G-protein alpha-subunit binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables Hsp90 protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables heat shock protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables microtubule binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables myosin phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphoprotein phosphatase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables phosphoprotein phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein serine/threonine phosphatase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein serine/threonine phosphatase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in perikaryon ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    part_of protein folding chaperone complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in proximal dendrite ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    serine/threonine-protein phosphatase 5
    Names
    ANP receptor
    protein phosphatase T
    NP_001404084.1
    NP_035285.2
    XP_006539726.1
    XP_017177532.1
    XP_030098096.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417155.1NP_001404084.1  serine/threonine-protein phosphatase 5 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC148976
      Related
      ENSMUSP00000122783.2, ENSMUST00000142597.2
    2. NM_011155.3NP_035285.2  serine/threonine-protein phosphatase 5 isoform 1

      See identical proteins and their annotated locations for NP_035285.2

      Status: VALIDATED

      Source sequence(s)
      AC148976
      Consensus CDS
      CCDS20859.1
      UniProtKB/Swiss-Prot
      G5E819, O35299, Q60676
      UniProtKB/TrEMBL
      F7BX26
      Related
      ENSMUSP00000003183.6, ENSMUST00000003183.12
      Conserved Domains (7) summary
      smart00028
      Location:2861
      TPR; Tetratricopeptide repeats
      smart00156
      Location:204480
      PP2Ac; Protein phosphatase 2A homologues, catalytic domain
      sd00006
      Location:2856
      TPR; TPR repeat [structural motif]
      cd07417
      Location:176491
      MPP_PP5_C; PP5, C-terminal metallophosphatase domain
      pfam00515
      Location:96129
      TPR_1; Tetratricopeptide repeat
      pfam13371
      Location:71134
      TPR_9; Tetratricopeptide repeat
      pfam13414
      Location:2793
      TPR_11; TPR repeat

    RNA

    1. NR_184426.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC148976
    2. NR_184427.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC148976

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      16738575..16761812 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017322043.2XP_017177532.1  serine/threonine-protein phosphatase 5 isoform X1

      Conserved Domains (1) summary
      cd07417
      Location:70385
      MPP_PP5_C; PP5, C-terminal metallophosphatase domain
    2. XM_030242236.2XP_030098096.1  serine/threonine-protein phosphatase 5 isoform X1

      Conserved Domains (1) summary
      cd07417
      Location:70385
      MPP_PP5_C; PP5, C-terminal metallophosphatase domain
    3. XM_006539663.5XP_006539726.1  serine/threonine-protein phosphatase 5 isoform X1

      Conserved Domains (1) summary
      cd07417
      Location:70385
      MPP_PP5_C; PP5, C-terminal metallophosphatase domain