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    Oit3 oncoprotein induced transcript 3 [ Mus musculus (house mouse) ]

    Gene ID: 18302, updated on 21-Apr-2024

    Summary

    Official Symbol
    Oit3provided by MGI
    Official Full Name
    oncoprotein induced transcript 3provided by MGI
    Primary source
    MGI:MGI:1201782
    See related
    Ensembl:ENSMUSG00000009654 AllianceGenome:MGI:1201782
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    LZP; EF-9
    Summary
    Predicted to be an extracellular matrix structural constituent. Acts upstream of or within urate homeostasis. Predicted to be located in nucleus. Predicted to be active in cell surface and extracellular space. Is expressed in embryo and liver. Orthologous to human OIT3 (oncoprotein induced transcript 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in liver E18 (RPKM 16.9), liver E14.5 (RPKM 11.4) and 7 other tissues See more
    Orthologs
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    Genomic context

    Location:
    10 B4; 10 29.54 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (59258782..59277601, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (59422960..59441779, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane 23 homolog pseudogene Neighboring gene phospholipase A2, group XIIB Neighboring gene predicted gene, 36318 Neighboring gene mitochondrial calcium uniporter Neighboring gene STARR-seq mESC enhancer starr_26771 Neighboring gene STARR-seq mESC enhancer starr_26772 Neighboring gene predicted gene, 40671 Neighboring gene STARR-positive B cell enhancer ABC_E9788 Neighboring gene predicted gene 10322

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (2) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within renal system process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    oncoprotein-induced transcript 3 protein
    Names
    liver-specific zona pellucida domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010959.2NP_035089.1  oncoprotein-induced transcript 3 protein precursor

      See identical proteins and their annotated locations for NP_035089.1

      Status: PROVISIONAL

      Source sequence(s)
      AK040570
      Consensus CDS
      CCDS23865.1
      UniProtKB/Swiss-Prot
      P97806, Q811T0, Q8C9U1, Q8R4V5
      Related
      ENSMUSP00000009798.5, ENSMUST00000009798.5
      Conserved Domains (3) summary
      smart00241
      Location:268513
      ZP; Zona pellucida (ZP) domain
      pfam00100
      Location:394513
      Zona_pellucida; Zona pellucida-like domain
      pfam14670
      Location:227262
      FXa_inhibition; Coagulation Factor Xa inhibitory site

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      59258782..59277601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)