U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Ntsr2 neurotensin receptor 2 [ Mus musculus (house mouse) ]

    Gene ID: 18217, updated on 21-Apr-2024

    Summary

    Official Symbol
    Ntsr2provided by MGI
    Official Full Name
    neurotensin receptor 2provided by MGI
    Primary source
    MGI:MGI:108018
    See related
    Ensembl:ENSMUSG00000020591 AllianceGenome:MGI:108018
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NT2R; NTR2; NTRL; NT-R-2
    Summary
    Enables G protein-coupled neurotensin receptor activity. Acts upstream of or within phospholipase C-activating G protein-coupled receptor signaling pathway and regulation of membrane potential. Located in membrane. Orthologous to human NTSR2 (neurotensin receptor 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in genital fat pad adult (RPKM 70.4), cortex adult (RPKM 64.8) and 5 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    12 A1.1; 12 7.98 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (16703477..16710223)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (16653443..16660236)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_31636 Neighboring gene predicted gene, 53741 Neighboring gene STARR-seq mESC enhancer starr_31639 Neighboring gene lipin 1 Neighboring gene STARR-seq mESC enhancer starr_31643 Neighboring gene STARR-positive B cell enhancer ABC_E11503 Neighboring gene STARR-seq mESC enhancer starr_31645 Neighboring gene gene regulated by estrogen in breast cancer protein Neighboring gene E2F transcription factor 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (5)  1 citation
    • Endonuclease-mediated (3) 

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled neurotensin receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables G protein-coupled neurotensin receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein-containing complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendritic shaft ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perikaryon ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    neurotensin receptor type 2
    Names
    low affinity neurotensin receptor
    low-affinity levocabastine-sensitive neurotensin receptor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361702.2NP_001348631.1  neurotensin receptor type 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC122228
      Conserved Domains (2) summary
      cd14964
      Location:3559
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:33233
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    2. NM_001361703.2NP_001348632.1  neurotensin receptor type 2 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC122228
      Consensus CDS
      CCDS88315.1
      UniProtKB/TrEMBL
      A0A1Y7VN85
      Related
      ENSMUSP00000152290.2, ENSMUST00000220892.2
      Conserved Domains (2) summary
      cd14964
      Location:3559
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:33233
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    3. NM_001412674.1NP_001399603.1  neurotensin receptor type 2 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC122228
    4. NM_001412675.1NP_001399604.1  neurotensin receptor type 2 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC122228
    5. NM_008747.3NP_032773.2  neurotensin receptor type 2 isoform 1

      See identical proteins and their annotated locations for NP_032773.2

      Status: VALIDATED

      Source sequence(s)
      AC122228
      Consensus CDS
      CCDS36407.1
      UniProtKB/Swiss-Prot
      P70310, Q8VIF5
      UniProtKB/TrEMBL
      Q920Q5
      Related
      ENSMUSP00000106693.2, ENSMUST00000111064.3
      Conserved Domains (1) summary
      pfam00001
      Location:85358
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RNA

    1. NR_182023.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122228, AK081073
      Related
      ENSMUST00000222957.2
    2. NR_182024.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122228

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      16703477..16710223
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)