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    Mrc1 mannose receptor, C type 1 [ Mus musculus (house mouse) ]

    Gene ID: 17533, updated on 21-Apr-2024

    Summary

    Official Symbol
    Mrc1provided by MGI
    Official Full Name
    mannose receptor, C type 1provided by MGI
    Primary source
    MGI:MGI:97142
    See related
    Ensembl:ENSMUSG00000026712 AllianceGenome:MGI:97142
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MR; CD206
    Summary
    Enables mannose binding activity and transmembrane signaling receptor activity. Acts upstream of or within cellular response to interferon-gamma; cellular response to interleukin-4; and cellular response to lipopolysaccharide. Located in cell surface. Is expressed in several structures, including hemolymphoid system; intestine; liver; lung; and yolk sac. Orthologous to human MRC1 (mannose receptor C-type 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in bladder adult (RPKM 7.7), placenta adult (RPKM 4.9) and 22 other tissues See more
    Orthologs
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    Genomic context

    Location:
    2 A2; 2 10.46 cM
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (14234225..14336834)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (14229414..14332023)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_03722 Neighboring gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 Neighboring gene STARR-seq mESC enhancer starr_03726 Neighboring gene transmembrane protein 236 Neighboring gene STARR-positive B cell enhancer ABC_E5890 Neighboring gene STARR-seq mESC enhancer starr_03727 Neighboring gene STARR-seq mESC enhancer starr_03728 Neighboring gene microRNA 511 Neighboring gene STARR-seq mESC enhancer starr_03729 Neighboring gene solute carrier family 39 (zinc transporter), member 12 Neighboring gene STARR-seq mESC enhancer starr_03730 Neighboring gene predicted gene 13266 Neighboring gene STARR-seq mESC enhancer starr_03732

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables cargo receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables mannose binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transmembrane signaling receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    macrophage mannose receptor 1
    Names
    MMR

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008625.2NP_032651.2  macrophage mannose receptor 1 precursor

      See identical proteins and their annotated locations for NP_032651.2

      Status: VALIDATED

      Source sequence(s)
      AK079897, AL845290, BE197931, Z11974
      Consensus CDS
      CCDS15700.1
      UniProtKB/Swiss-Prot
      Q61830, Q8C502
      UniProtKB/TrEMBL
      Q2HZ94
      Related
      ENSMUSP00000028045.3, ENSMUST00000028045.4
      Conserved Domains (5) summary
      smart00059
      Location:161209
      FN2; Fibronectin type 2 domain
      cd00037
      Location:659779
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      smart00034
      Location:362487
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00458
      Location:27142
      RICIN; Ricin-type beta-trefoil
      cd00161
      Location:34140
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      14234225..14336834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)