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    Mpeg1 macrophage expressed gene 1 [ Mus musculus (house mouse) ]

    Gene ID: 17476, updated on 21-Apr-2024

    Summary

    Official Symbol
    Mpeg1provided by MGI
    Official Full Name
    macrophage expressed gene 1provided by MGI
    Primary source
    MGI:MGI:1333743
    See related
    Ensembl:ENSMUSG00000046805 AllianceGenome:MGI:1333743
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    P-2; MPS1; PFN2; Mpg-1; mPFN2
    Summary
    Involved in defense response to Gram-negative bacterium; defense response to Gram-positive bacterium; and pore formation in membrane of other organism. Located in phagocytic vesicle. Is expressed in several structures, including blood vessel; central nervous system; developing vasculature of reproductive system; and retina outer nuclear layer. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human MPEG1 (macrophage expressed 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in spleen adult (RPKM 17.8), lung adult (RPKM 13.2) and 22 other tissues See more
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    Genomic context

    Location:
    19 A; 19 8.72 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (12438134..12442649)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (12460770..12465285)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 5 subfamily A member 3 Neighboring gene pore forming protein-like Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:12551432-12551640 Neighboring gene deltex 4, E3 ubiquitin ligase Neighboring gene STARR-positive B cell enhancer ABC_E2522 Neighboring gene STARR-seq mESC enhancer starr_45593 Neighboring gene predicted gene, 57827 Neighboring gene family with sequence similarity 111, member A pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC150002, MGC150003

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables pore-forming activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables wide pore channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables wide pore channel activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
     
    NOT involved_in antibacterial innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in antibacterial innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in antigen processing and presentation of exogenous peptide antigen IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in antigen processing and presentation of exogenous peptide antigen via MHC class I IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in defense response to Gram-negative bacterium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in defense response to Gram-negative bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in defense response to Gram-positive bacterium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in defense response to Gram-positive bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in defense response to bacterium IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in defense response to bacterium ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in dendritic cell antigen processing and presentation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within immune system process IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within innate immune response IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasmic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in endolysosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in phagocytic vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in phagocytic vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in phagolysosome membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    macrophage-expressed gene 1 protein
    Names
    macrophage gene 1 protein
    perforin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001374668.1NP_001361597.1  macrophage-expressed gene 1 protein precursor

      Status: VALIDATED

      Source sequence(s)
      AC151730
      UniProtKB/TrEMBL
      E9QN37
      Conserved Domains (1) summary
      pfam01823
      Location:125341
      MACPF; MAC/Perforin domain
    2. NM_010821.2NP_034951.2  macrophage-expressed gene 1 protein precursor

      Status: VALIDATED

      Source sequence(s)
      AC151730
      UniProtKB/TrEMBL
      E9QN37
      Related
      ENSMUSP00000108573.4, ENSMUST00000081035.9
      Conserved Domains (1) summary
      pfam01823
      Location:125341
      MACPF; MAC/Perforin domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      12438134..12442649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)