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    Vmn1r30 vomeronasal 1 receptor 30 [ Mus musculus (house mouse) ]

    Gene ID: 171195, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Vmn1r30provided by MGI
    Official Full Name
    vomeronasal 1 receptor 30provided by MGI
    Primary source
    MGI:MGI:2159458
    See related
    Ensembl:ENSMUSG00000095670 AllianceGenome:MGI:2159458
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    V1rc9; V1rc22
    Summary
    Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    6 B3; 6 27.82 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (58411833..58420609, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (58434848..58443624, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 29 Neighboring gene STARR-seq mESC enhancer starr_16017 Neighboring gene vomeronasal 1 receptor, pseudogene 20 Neighboring gene vomeronasal 1 receptor, pseudogene 21 Neighboring gene vomeronasal 1 receptor 31

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Sequence diversity and genomic organization of vomeronasal receptor genes in the mouse. Del Punta K, et al. Genome Res, 2000 Dec. PMID 11116090, Free PMC Article
    2. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
    3. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
    4. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
    5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables pheromone binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables pheromone receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables signaling receptor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to pheromone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    acts_upstream_of_or_within sensory perception of chemical stimulus TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vomeronasal 1 receptor 30
    Names
    vomernasal 1 receptor Vmn1r30
    vomeronasal 1 receptor, C22
    vomeronasal 1 receptor, C9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134177.1 → NP_598938.1  vomeronasal 1 receptor 30

      See identical proteins and their annotated locations for NP_598938.1

      Status: PROVISIONAL

      Source sequence(s)
      AY065478
      Consensus CDS
      CCDS51797.1
      UniProtKB/TrEMBL
      G3X9G3, Q8R2D2, Q9EQ35
      Related
      ENSMUSP00000087336.4, ENSMUST00000078890.5
      Conserved Domains (2) summary
      cd14964
      Location:4 → 28
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:2 → 292
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      58411833..58420609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321423.1 → XP_017176912.1  vomeronasal 1 receptor 30 isoform X1

      UniProtKB/TrEMBL
      G3X9G3, Q8R2D2, Q9EQ35
      Related
      ENSMUSP00000153952.2, ENSMUST00000226334.2
      Conserved Domains (2) summary
      cd14964
      Location:4 → 28
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:2 → 292
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    2. XM_017321424.1 → XP_017176913.1  vomeronasal 1 receptor 30 isoform X1

      UniProtKB/TrEMBL
      G3X9G3, Q8R2D2, Q9EQ35
      Related
      ENSMUSP00000153898.2, ENSMUST00000228577.2
      Conserved Domains (2) summary
      cd14964
      Location:4 → 28
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:2 → 292
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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