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    Crp C-reactive protein, pentraxin-related [ Mus musculus (house mouse) ]

    Gene ID: 12944, updated on 5-Mar-2024

    Summary

    Official Symbol
    Crpprovided by MGI
    Official Full Name
    C-reactive protein, pentraxin-relatedprovided by MGI
    Primary source
    MGI:MGI:88512
    See related
    Ensembl:ENSMUSG00000037942 AllianceGenome:MGI:88512
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable several functions, including cholesterol binding activity; complement component C1q complex binding activity; and low-density lipoprotein particle binding activity. Predicted to be involved in several processes, including complement activation, classical pathway; regulation of gene expression; and regulation of superoxide anion generation. Predicted to act upstream of or within vasoconstriction. Predicted to be located in filopodium and growth cone. Predicted to be active in extracellular space. Is expressed in embryo and liver. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to human CRP (C-reactive protein). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in liver E18 (RPKM 127.7), liver adult (RPKM 108.0) and 2 other tissues See more
    Orthologs
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    Genomic context

    Location:
    1 H3; 1 80.13 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (172525623..172527533)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (172698056..172699966)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr1:174563024-174563325 Neighboring gene predicted gene, 35601 Neighboring gene STARR-seq mESC enhancer starr_03070 Neighboring gene high mobility group protein B1-like Neighboring gene STARR-seq mESC enhancer starr_03071 Neighboring gene STARR-seq mESC enhancer starr_03072 Neighboring gene predicted gene, 38051 Neighboring gene Fc receptor, IgE, high affinity I, alpha polypeptide pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables calcium ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables cholesterol binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables complement component C1q complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables complement component C1q complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables low-density lipoprotein particle binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables low-density lipoprotein particle binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables low-density lipoprotein particle receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within acute-phase response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to calcium ion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in complement activation, classical pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of lipid storage ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of macrophage derived foam cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of mononuclear cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of superoxide anion generation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of dendrite development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of nitric oxide biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of superoxide anion generation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein polymerization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of interleukin-8 production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of low-density lipoprotein particle clearance ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within vasoconstriction ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in filopodium ISO
    Inferred from Sequence Orthology
    more info
     
    located_in growth cone ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    C-reactive protein
    Names
    C-reactive protein, petaxin related

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007768.4NP_031794.3  C-reactive protein precursor

      See identical proteins and their annotated locations for NP_031794.3

      Status: VALIDATED

      Source sequence(s)
      AC131177
      Consensus CDS
      CCDS35787.1
      UniProtKB/Swiss-Prot
      E9PZ20, P14847
      UniProtKB/TrEMBL
      I6L966
      Related
      ENSMUSP00000044665.4, ENSMUST00000038495.5
      Conserved Domains (1) summary
      pfam00354
      Location:26221
      Pentaxin; Pentaxin family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      172525623..172527533
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)