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    Atox1 antioxidant 1 copper chaperone [ Mus musculus (house mouse) ]

    Gene ID: 11927, updated on 5-Mar-2024

    Summary

    Official Symbol
    Atox1provided by MGI
    Official Full Name
    antioxidant 1 copper chaperoneprovided by MGI
    Primary source
    MGI:MGI:1333855
    See related
    Ensembl:ENSMUSG00000018585 AllianceGenome:MGI:1333855
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Atx1
    Summary
    Predicted to enable several functions, including ATPase binding activity; copper-dependent protein binding activity; and cuprous ion binding activity. Acts upstream of or within cellular copper ion homeostasis and copper ion transport. Predicted to be active in cytosol. Orthologous to human ATOX1 (antioxidant 1 copper chaperone). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 244.6), kidney adult (RPKM 226.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Atox1 in Genome Data Viewer
    Location:
    11 B1.3; 11 33.07 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (55337463..55352034, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (55446637..55461208, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31842 Neighboring gene STARR-seq mESC enhancer starr_29535 Neighboring gene secreted acidic cysteine rich glycoprotein Neighboring gene STARR-seq mESC enhancer starr_29537 Neighboring gene STARR-seq mESC enhancer starr_29542 Neighboring gene STARR-seq mESC enhancer starr_29544 Neighboring gene STARR-positive B cell enhancer ABC_E373 Neighboring gene predicted gene 12235 Neighboring gene G3BP stress granule assembly factor 1 Neighboring gene predicted gene 12238

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables copper chaperone activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables copper chaperone activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables copper ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables copper-dependent protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables cuprous ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in copper ion export ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in copper ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within copper ion transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within intracellular copper ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to oxidative stress ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    copper transport protein ATOX1
    Names
    ATX1 (antioxidant protein 1) homolog 1
    metal transport protein ATX1
    NP_033850.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009720.3NP_033850.1  copper transport protein ATOX1

      See identical proteins and their annotated locations for NP_033850.1

      Status: VALIDATED

      Source sequence(s)
      BP773958, BQ747750
      Consensus CDS
      CCDS36158.1
      UniProtKB/Swiss-Prot
      O08997, Q5NCU2
      Related
      ENSMUSP00000104485.2, ENSMUST00000108857.2
      Conserved Domains (1) summary
      cd00371
      Location:563
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      55337463..55352034 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)