Ssc4d scavenger receptor cysteine rich family, 4 domains [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Ssc4dprovided by MGI
Official Full Name: scavenger receptor cysteine rich family, 4 domainsprovided by MGI
Primary source: MGI:MGI:1924709
See related: Ensembl:ENSMUSG00000029699 AllianceGenome:MGI:1924709
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Srcrb4d; S4D-SRCRB; SRCRB-S4D; C330016E03Rik
Summary: Predicted to enable scavenger receptor activity. Predicted to be located in extracellular region and membrane. Orthologous to human SSC4D (scavenger receptor cysteine rich family member with 4 domains). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in ovary adult (RPKM 2.1), genital fat pad adult (RPKM 2.0) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 5 G2; 5 75.6 cM

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	5	NC_000071.7 (135989074..136003389, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	5	NC_000071.6 (135960220..135974535, complement)

Chromosome 5 - NC_000071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: scavenger receptor cysteine-rich domain-containing group B protein

Names: four scavenger receptor cysteine-rich domains-containing protein; scavenger receptor cysteine rich domain containing, group B (4 domains)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.