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    Lyrm2 LYR motif containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 108755, updated on 5-Mar-2024

    Summary

    Official Symbol
    Lyrm2provided by MGI
    Official Full Name
    LYR motif containing 2provided by MGI
    Primary source
    MGI:MGI:1917573
    See related
    Ensembl:ENSMUSG00000045854 AllianceGenome:MGI:1917573
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610208E05Rik
    Summary
    Located in mitochondrion. Orthologous to human LYRM2 (LYR motif containing 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in CNS E11.5 (RPKM 19.1), CNS E14 (RPKM 15.5) and 21 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    4 A5; 4 14.42 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (32800259..32802268)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (32800259..32802268)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene midasin AAA ATPase 1 Neighboring gene predicted gene, 42267 Neighboring gene ankyrin repeat domain 6 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:32951659-32951860 Neighboring gene STARR-seq mESC enhancer starr_09871 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:32993701-32993916 Neighboring gene enoyl-CoA hydratase domain-containing protein 2, mitochondrial pseudogene Neighboring gene STARR-seq mESC enhancer starr_09876 Neighboring gene ribosomal protein, large, P1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    LYR motif-containing protein 2
    Names
    novel complex 1 (LYR family) protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175364.4NP_780573.1  LYR motif-containing protein 2

      See identical proteins and their annotated locations for NP_780573.1

      Status: VALIDATED

      Source sequence(s)
      AK044791, BY131987, BY465252
      Consensus CDS
      CCDS38703.1
      UniProtKB/Swiss-Prot
      A2ANY7, Q8R033
      Related
      ENSMUSP00000061451.5, ENSMUST00000062802.5
      Conserved Domains (1) summary
      pfam05347
      Location:2078
      Complex1_LYR; Complex 1 protein (LYR family)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      32800259..32802268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)