Lratd1 LRAT domain containing 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Lratd1provided by MGI
Official Full Name: LRAT domain containing 1provided by MGI
Primary source: MGI:MGI:2145011
See related: Ensembl:ENSMUSG00000020607 AllianceGenome:MGI:2145011
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Nse1; Fam84a; 2310003N02Rik; 4731402F03Rik
Summary: Predicted to be involved in cell morphogenesis and cell motility. Predicted to be located in cytoplasm. Is expressed in cortical plate; nasal cavity respiratory epithelium; submandibular gland primordium; urethra; and vibrissa. Orthologous to human LRATD1 (LRAT domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Broad expression in ovary adult (RPKM 21.9), small intestine adult (RPKM 17.0) and 19 other tissues See more
Orthologs: human all
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Genomic context

Location:: 12 A1.1; 12 6.93 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	12	NC_000078.7 (14197599..14202039, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	12	NC_000078.6 (14147598..14152038, complement)

Chromosome 12 - NC_000078.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

FAM84A is up-regulated by CAR during the development of liver tumors.
Title: Nuclear receptor CAR-regulated expression of the FAM84A gene during the development of mouse liver tumors.

Submit: New GeneRIF Correction

General gene information

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Markers

RH141825 (e-PCR)
- UniSTS:223817

AW125753 (e-PCR)
- UniSTS:180367

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in cell morphogenesis	IBA Inferred from Biological aspect of Ancestor more info
involved_in cell morphogenesis	ISO Inferred from Sequence Orthology more info
involved_in cell motility	IBA Inferred from Biological aspect of Ancestor more info
involved_in cell motility	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein LRATD1

Names: family with sequence similarity 84, member A; protein FAM84A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.