Mycbpap MYCBP associated protein [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Mycbpapprovided by MGI
Official Full Name: MYCBP associated proteinprovided by MGI
Primary source: MGI:MGI:2388726
See related: Ensembl:ENSMUSG00000039110 AllianceGenome:MGI:2388726
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: AMAM-1; AMAP-1; 4932408B01Rik
Summary: Predicted to act upstream of or within cell differentiation and spermatogenesis. Predicted to be located in cytoplasm. Is expressed in 4th ventricle lateral recess; choroid plexus; lateral ventricle choroid plexus; and pancreas epithelium. Orthologous to human MYCBPAP (MYCBP associated protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in testis adult (RPKM 46.8) and lung adult (RPKM 2.1) See more
Orthologs: human all
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Genomic context

Location:: 11 D; 11 58.9 cM

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	11	NC_000077.7 (94392173..94423219, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	11	NC_000077.6 (94501347..94532386, complement)

Chromosome 11 - NC_000077.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

differential gene expression of AMAP-1 during the course of spermatogenesis (AMAP-1)
Title: AMAP-1, a novel testis-specific AMY-1-binding protein, is differentially expressed during the course of spermatogenesis.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables clathrin binding	IBA Inferred from Biological aspect of Ancestor more info
enables molecular_function	ND No biological Data available more info
enables phospholipid binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info
involved_in endocytosis	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within multicellular organism development	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within spermatogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of clathrin vesicle coat	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
is_active_in endosome	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: MYCBP-associated protein

Names: AMY-1-binding protein 1; AMY1-associating protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001415760.1 → NP_001402689.1 MYCBP-associated protein isoform 1

Status: VALIDATED

Source sequence(s)

AL645809

UniProtKB/TrEMBL

A0A668KL73

Related

ENSMUSP00000159222.2, ENSMUST00000239238.2
NM_170671.3 → NP_733771.3 MYCBP-associated protein isoform 2

Status: VALIDATED

Source sequence(s)

AL645809

Consensus CDS

CCDS48887.1

Related

ENSMUSP00000091477.4, ENSMUST00000093945.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000077.7 Reference GRCm39 C57BL/6J

Range

94392173..94423219 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006531938.5 → XP_006532001.1 MYCBP-associated protein isoform X1

UniProtKB/Swiss-Prot

Q5SUV2, Q80YS8, Q8R2Q9

Conserved Domains (1) summary

pfam14646
Location:241 → 658

MYCBPAP; MYCBP-associated protein family
XM_006531939.4 → XP_006532002.1 MYCBP-associated protein isoform X2

UniProtKB/Swiss-Prot

Q5SUV2, Q80YS8, Q8R2Q9

Conserved Domains (1) summary

pfam14646
Location:241 → 658

MYCBPAP; MYCBP-associated protein family