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    Gm20199 predicted gene, 20199 [ Mus musculus (house mouse) ]

    Gene ID: 100504377, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Gm20199provided by MGI
    Official Full Name
    predicted gene, 20199provided by MGI
    Primary source
    MGI:MGI:5012384
    See related
    AllianceGenome:MGI:5012384
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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    Genomic context

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    See Gm20199 in Genome Data Viewer
    Location:
    9 B; 9 32.02 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (59385028..59389024, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (59477745..59481741, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 4 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:59201235-59201388 Neighboring gene STARR-seq mESC enhancer starr_24298 Neighboring gene STARR-seq mESC enhancer starr_24299 Neighboring gene ariadne RBR E3 ubiquitin protein ligase 1 Neighboring gene STARR-seq mESC enhancer starr_24300 Neighboring gene STARR-seq mESC enhancer starr_24301 Neighboring gene STARR-seq mESC enhancer starr_24302 Neighboring gene ribosomal protein S11, pseudogene 1 Neighboring gene STARR-positive B cell enhancer mm9_chr9:59334521-59334822 Neighboring gene predicted gene, 33180 Neighboring gene transmembrane protein 202 Neighboring gene hexosaminidase A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045640.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK138089, AK142603

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      59385028..59389024 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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