Cmtm1 CKLF-like MARVEL transmembrane domain containing 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Cmtm1provided by MGI
Official Full Name: CKLF-like MARVEL transmembrane domain containing 1provided by MGI
Primary source: MGI:MGI:2447159
See related: Ensembl:ENSMUSG00000110430 AllianceGenome:MGI:2447159
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: CKLFH; CKLFH1; CHLFH1a; Cklfsf1
Summary: Predicted to be integral component of membrane. Orthologous to human CMTM1 (CKLF like MARVEL transmembrane domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Restricted expression toward testis adult (RPKM 35.0) See more
Orthologs: human all
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Genomic context

Location:: 8 D3; 8 53.04 cM

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	8	NC_000074.7 (105020174..105036777, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	8	NC_000074.6 (104293542..104310145, complement)

Chromosome 8 - NC_000074.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2) 1 citation

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: CKLF-like MARVEL transmembrane domain-containing protein 1

Names: chemokine-like factor super family 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_181990.2 → NP_871790.2 CKLF-like MARVEL transmembrane domain-containing protein 1

See identical proteins and their annotated locations for NP_871790.2

Status: VALIDATED

Source sequence(s)

AC121275, AC121952

Consensus CDS

CCDS57636.1

UniProtKB/TrEMBL

B7ZP21

Related

ENSMUSP00000124855.2, ENSMUST00000159039.2

Conserved Domains (2) summary

pfam01284
Location:172 → 274

MARVEL; Membrane-associating domain

pfam07001
Location:30 → 108

BAT2_N; BAT2 N-terminus