U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Fam181a family with sequence similarity 181, member A [ Mus musculus (house mouse) ]

    Gene ID: 100504156, updated on 8-Mar-2024

    Summary

    Official Symbol
    Fam181aprovided by MGI
    Official Full Name
    family with sequence similarity 181, member Aprovided by MGI
    Primary source
    MGI:MGI:3647570
    See related
    Ensembl:ENSMUSG00000096753 AllianceGenome:MGI:3647570
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG544888
    Summary
    Is expressed in several structures, including adrenal gland; brain; genitourinary system; liver; and neural ectoderm. Orthologous to human FAM181A (family with sequence similarity 181 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 49.5), CNS E11.5 (RPKM 9.2) and 2 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    12 E; 12 52.9 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (103277272..103283326)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (103310966..103317067)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene unc-79 homolog Neighboring gene STARR-seq mESC enhancer starr_33121 Neighboring gene proline rich membrane anchor 1 Neighboring gene STARR-positive B cell enhancer ABC_E7173 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:104569739-104569961 Neighboring gene STARR-positive B cell enhancer ABC_E4038 Neighboring gene predicted gene 29508 Neighboring gene STARR-positive B cell enhancer ABC_E1863 Neighboring gene predicted gene 15523 Neighboring gene ankyrin repeat and SOCS box-containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E7174 Neighboring gene OTU domain, ubiquitin aldehyde binding 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195726.2NP_001182655.1  protein FAM181A

      See identical proteins and their annotated locations for NP_001182655.1

      Status: VALIDATED

      Source sequence(s)
      AC160131
      Consensus CDS
      CCDS56858.1
      UniProtKB/TrEMBL
      J3QNB7
      Related
      ENSMUSP00000136681.2, ENSMUST00000179363.2
      Conserved Domains (1) summary
      pfam15238
      Location:3280
      FAM181
    2. NM_001413260.1NP_001400189.1  protein FAM181A

      Status: VALIDATED

      Source sequence(s)
      AC160131
      UniProtKB/TrEMBL
      J3QNB7
    3. NM_001413261.1NP_001400190.1  protein FAM181A

      Status: VALIDATED

      Source sequence(s)
      AC160131
      UniProtKB/TrEMBL
      J3QNB7
    4. NM_001413262.1NP_001400191.1  protein FAM181A

      Status: VALIDATED

      Source sequence(s)
      AC160131
      UniProtKB/TrEMBL
      J3QNB7
      Related
      ENSMUSP00000140842.2, ENSMUST00000191218.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      103277272..103283326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515322.4XP_006515385.1  protein FAM181A isoform X1

      See identical proteins and their annotated locations for XP_006515385.1

      UniProtKB/TrEMBL
      J3QNB7
      Conserved Domains (1) summary
      pfam15238
      Location:3280
      FAM181
    2. XM_006515320.2XP_006515383.1  protein FAM181A isoform X1

      See identical proteins and their annotated locations for XP_006515383.1

      UniProtKB/TrEMBL
      J3QNB7
      Conserved Domains (1) summary
      pfam15238
      Location:3280
      FAM181