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    Gm16630 predicted gene, 16630 [ Mus musculus (house mouse) ]

    Gene ID: 100503622, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Gm16630provided by MGI
    Official Full Name
    predicted gene, 16630provided by MGI
    Primary source
    MGI:MGI:4439554
    See related
    Ensembl:ENSMUSG00000107875 AllianceGenome:MGI:4439554
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm44696
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm16630 in Genome Data Viewer
    Location:
    6 B2.3; 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (48107840..48372342, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (48130906..48395408, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15788 Neighboring gene zinc finger protein 777 Neighboring gene zinc finger protein 746 Neighboring gene nuclear encoded tRNA cysteine 37 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 10 (anticodon GCA) Neighboring gene predicted gene, 30435 Neighboring gene nuclear encoded tRNA cysteine 13 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 36 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 4 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 38 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 35 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 39 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 40 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 8 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 41 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 34 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 49 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 1 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 33 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 48 (anticodon GCA) Neighboring gene predicted gene, 38802 Neighboring gene nuclear encoded tRNA cysteine 32 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 31 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 15 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 30 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 29 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 42 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 43 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 28 (anticodon GCA) Neighboring gene predicted gene, 30362 Neighboring gene nuclear encoded tRNA cysteine 12 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 50 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 44 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 27 (anticodon GCA) Neighboring gene predicted gene, 22122 Neighboring gene nuclear encoded tRNA cysteine 17 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 6 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 16 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 26 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 7 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 25 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 9 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 45 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 24 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 23 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 22 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 14 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 5 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 21 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 20 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 46 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 11 (anticodon GCA) Neighboring gene nuclear encoded tRNA cysteine 19 (anticodon GCA) Neighboring gene retinol dehydrogenase 11 pseudogene Neighboring gene KRAB-A domain containing 1 Neighboring gene predicted gene, 38803 Neighboring gene predicted gene, 57777 Neighboring gene zinc finger protein 467

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_152250.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK158926

    2. NR_152251.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK043339, AK158926, AW488334
      Related
      ENSMUST00000181943.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      48107840..48372342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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