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    4930453H23Rik RIKEN cDNA 4930453H23 gene [ Mus musculus (house mouse) ]

    Gene ID: 100503481, updated on 8-Feb-2024

    Summary

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    Official Symbol
    4930453H23Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930453H23 geneprovided by MGI
    Primary source
    MGI:MGI:1921933
    See related
    Ensembl:ENSMUSG00000087358 AllianceGenome:MGI:1921933
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 3.4) See more
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    Genomic context

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    See 4930453H23Rik in Genome Data Viewer
    Location:
    X A2; X 16.63 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (21072819..21087904, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (21206580..21221665, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46893 Neighboring gene STARR-seq mESC enhancer starr_46894 Neighboring gene predicted gene, 53272 Neighboring gene predicted gene 5932 Neighboring gene STARR-seq mESC enhancer starr_46895 Neighboring gene STARR-seq mESC enhancer starr_46896 Neighboring gene predicted gene 6938 Neighboring gene nucleolar and coiled-body phosphoprotein 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_169165.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AL671922
      Related
      ENSMUST00000125569.8

    2. NR_169166.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL671922
      Related
      ENSMUST00000178516.3

    3. NR_169167.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL671922

    4. NR_169168.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL671922

    5. NR_169169.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL671922

    6. NR_169170.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL671922

    7. NR_169171.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL671922
      Related
      ENSMUST00000155208.3

    8. NR_169172.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL671922

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      21072819..21087904 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001252013.1: Suppressed sequence

      Description
      NM_001252013.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.