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    Platr22 pluripotency associated transcript 22 [ Mus musculus (house mouse) ]

    Gene ID: 100503474, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Platr22provided by MGI
    Official Full Name
    pluripotency associated transcript 22provided by MGI
    Primary source
    MGI:MGI:4439804
    See related
    AllianceGenome:MGI:4439804
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm16880
    Summary
    Is active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    1 E4; 1 59.95 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (136623949..136653466)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (136696211..136725728)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34056 Neighboring gene predicted gene, 41958 Neighboring gene STARR-seq mESC enhancer starr_02427 Neighboring gene predicted gene, 19705 Neighboring gene STARR-seq mESC enhancer starr_02432 Neighboring gene predicted gene, 24086 Neighboring gene STARR-positive B cell enhancer ABC_E2012 Neighboring gene hydroxymethylbilane synthase pseudogene Neighboring gene macrophage migration inhibitory factor, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. LncRNA Platr22 promotes super-enhancer activity and stem cell pluripotency. Yan P, et al. J Mol Cell Biol, 2021 Aug 4. PMID 33049031, Free PMC Article
    2. Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Bergmann JH, et al. Genome Res, 2015 Sep. PMID 26048247, Free PMC Article
    3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LncRNA Platr22 promotes super-enhancer activity and stem cell pluripotency.
      Title: LncRNA Platr22 promotes super-enhancer activity and stem cell pluripotency.
    Submit: New GeneRIF Correction

    General gene information

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    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037986.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC125186

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      136623949..136653466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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