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    Gm15972 predicted gene 15972 [ Mus musculus (house mouse) ]

    Gene ID: 100502834, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Gm15972provided by MGI
    Official Full Name
    predicted gene 15972provided by MGI
    Primary source
    MGI:MGI:3801965
    See related
    Ensembl:ENSMUSG00000086287 AllianceGenome:MGI:3801965
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in bladder adult (RPKM 1.8), genital fat pad adult (RPKM 1.2) and 20 other tissues See more
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    Genomic context

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    Location:
    18 A2; 18 12.08 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (23883504..23885362, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (23750447..23752305, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene dystrobrevin alpha Neighboring gene STARR-seq mESC enhancer starr_44038 Neighboring gene STARR-seq mESC enhancer starr_44039 Neighboring gene STARR-seq mESC enhancer starr_44040 Neighboring gene STARR-seq mESC enhancer starr_44041 Neighboring gene STARR-seq mESC enhancer starr_44043 Neighboring gene predicted gene, 47898 Neighboring gene STARR-seq mESC enhancer starr_44045 Neighboring gene STARR-positive B cell enhancer ABC_E5648 Neighboring gene microtubule-associated protein, RP/EB family, member 2 Neighboring gene microRNA 6360 Neighboring gene predicted gene, 23207

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Clone Names

    • AC145084.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126066.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AW124165, BE952893
      Related
      ENSMUST00000132571.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      23883504..23885362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.