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    Nlrp5-ps NLR family, pyrin domain containing 5, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 100417675, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Nlrp5-psprovided by MGI
    Official Full Name
    NLR family, pyrin domain containing 5, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:5010941
    See related
    Ensembl:ENSMUSG00000121301 AllianceGenome:MGI:5010941
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm18756
    Expression
    Broad expression in limb E14.5 (RPKM 3.9), whole brain E14.5 (RPKM 2.6) and 17 other tissues See more
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    Genomic context

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    Location:
    7 A1; 7 8.24 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (14264579..14356991, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (14530654..14623066, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene oocyte specific homeobox 4, pseudogene 1 Neighboring gene oocyte specific homeobox 4, pseudogene 2 Neighboring gene predicted gene, 38596 Neighboring gene STARR-seq mESC enhancer starr_18102 Neighboring gene oocyte specific homeobox 4, pseudogene 3 Neighboring gene vomeronasal 1 receptor 90 Neighboring gene oocyte specific homeobox 3, pseudogene 7 Neighboring gene oocyte specific homeobox 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045119.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC092752, AK140342

    2. NR_045120.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has alternate exon structure at both its 5' and 3' ends, and it includes an additional internal exon, compared to variant 1.
      Source sequence(s)
      AK016782
      Related
      ENSMUST00000044683.12

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      14264579..14356991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_018985.1: Suppressed sequence

      Description
      NG_018985.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein Strain
    Heading Accession and Version

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