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    Rps15a-ps6 ribosomal protein S15A, pseudogene 6 [ Mus musculus (house mouse) ]

    Gene ID: 100042173, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Rps15a-ps6provided by MGI
    Official Full Name
    ribosomal protein S15A, pseudogene 6provided by MGI
    Primary source
    MGI:MGI:3650298
    See related
    AllianceGenome:MGI:3650298
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm11968
    Annotation information
    Note: The original RefSeq record representing this pseudogene locus, NR_029471.1, was inadventently created from the opposite strand. The correct orientation for the pseudogene locus compared to its functional gene, Rps15a, is in NR_029471.2. [25 Aug 2010]
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    Genomic context

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    Location:
    11 A1; 11 3.92 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (6122508..6123331, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (6172508..6173331, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6947 Neighboring gene YKT6 v-SNARE homolog (S. cerevisiae) Neighboring gene calcium/calmodulin-dependent protein kinase II, beta Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:5900191-5900374 Neighboring gene STARR-positive B cell enhancer ABC_E11764 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:5917894-5918003 Neighboring gene NudC domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_28452 Neighboring gene STARR-seq mESC enhancer starr_28454 Neighboring gene STARR-positive B cell enhancer ABC_E10663 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:6100447-6100630 Neighboring gene NPC1 like intracellular cholesterol transporter 1 Neighboring gene predicted gene 11401

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • Rps15a pseudogene
    • ribosomal protein S15A pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029471.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL611926

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      6122508..6123331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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