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    3830408C21Rik RIKEN cDNA 3830408C21 gene [ Mus musculus (house mouse) ]

    Gene ID: 100040322, updated on 8-Feb-2024

    Summary

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    Official Symbol
    3830408C21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 3830408C21 geneprovided by MGI
    Primary source
    MGI:MGI:1917940
    See related
    Ensembl:ENSMUSG00000071181 AllianceGenome:MGI:1917940
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in CNS E18 (RPKM 2.8), CNS E14 (RPKM 2.5) and 24 other tissues See more
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    Genomic context

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    Location:
    13 D2.1; 13 58.22 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (107159078..107170026)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (107022570..107033518)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene importin 11 Neighboring gene STARR-seq mESC enhancer starr_35568 Neighboring gene STARR-seq mESC enhancer starr_35569 Neighboring gene STARR-seq mESC enhancer starr_35570 Neighboring gene STARR-positive B cell enhancer ABC_E1165 Neighboring gene predicted gene, 57603 Neighboring gene DIM1 rRNA methyltransferase and ribosome maturation factor Neighboring gene STARR-positive B cell enhancer ABC_E7276 Neighboring gene kinesin family member 2A Neighboring gene STARR-positive B cell enhancer ABC_E11558 Neighboring gene STARR-seq mESC enhancer starr_35572 Neighboring gene STARR-seq mESC enhancer starr_35573 Neighboring gene STARR-positive B cell enhancer ABC_E5414 Neighboring gene predicted gene, 31715 Neighboring gene family with sequence similarity 60, member A pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015471.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK014423
      Related
      ENSMUST00000225426.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      107159078..107170026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases