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    LOC100420424 Vac14, PIKFYVE complex component pseudogene [ Homo sapiens (human) ]

    Gene ID: 100420424, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC100420424
    Gene description
    Vac14, PIKFYVE complex component pseudogene
    See related
    Ensembl:ENSG00000258065
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    14q12
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (28857384..28858701, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (23055285..23056602, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (29326590..29327907, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1551 Neighboring gene long intergenic non-protein coding RNA 2282 Neighboring gene long intergenic non-protein coding RNA 2281 Neighboring gene long intergenic non-protein coding RNA 2327 Neighboring gene NANOG hESC enhancer GRCh37_chr14:29345421-29345922 Neighboring gene uncharacterized LOC107984685 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:29445875-29447074 Neighboring gene long intergenic non-protein coding RNA 2326 Neighboring gene RNA, U6 small nuclear 864, pseudogene Neighboring gene Sharpr-MPRA regulatory region 1682 Neighboring gene uncharacterized LOC102724934 Neighboring gene VISTA enhancer hs566 Neighboring gene VISTA enhancer hs1539 Neighboring gene VISTA enhancer hs1168 Neighboring gene VISTA enhancers hs342 and hs1523

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • VAC14 component of PIKFYVE complex pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_027255.1 

      Range
      101..1418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      28857384..28858701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      23055285..23056602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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