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    LOC100130618 tetratricopeptide repeat domain 14 pseudogene [ Homo sapiens (human) ]

    Gene ID: 100130618, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC100130618
    Gene description
    tetratricopeptide repeat domain 14 pseudogene
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    7q31.32
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (122159279..122162781)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (123475194..123478692)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (121799333..121802835)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:121513171-121513672 Neighboring gene protein tyrosine phosphatase receptor type Z1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:121575201-121575702 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:121575703-121576202 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:121578112-121578648 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:121578649-121579185 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:121593388-121594061 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:121642332-121642536 Neighboring gene RNA, U7 small nuclear 154 pseudogene Neighboring gene aminoadipate-semialdehyde synthase Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:121783127-121783632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18577 Neighboring gene uncharacterized LOC102724527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26563 Neighboring gene ribosomal protein L31 pseudogene 37 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:121924115-121924720 Neighboring gene FEZF1 antisense RNA 1 Neighboring gene FEZ family zinc finger 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008430.1 

      Range
      101..3603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      122159279..122162781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      123475194..123478692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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