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CG42497 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 8674071, updated on 29-Dec-2023

Summary

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Official Symbol
CG42497provided by FlyBase
Primary source
FLYBASE:FBgn0260223
Locus tag
Dmel_CG42497
See related
AllianceGenome:FB:FBgn0260223
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG42497; Dromel_CG9878_FBtr0071676_tim10_uORF
Summary
Predicted to be involved in regulation of dopamine metabolic process. Predicted to be located in mitochondrion. Is expressed in anterior midgut primordium; embryonic hindgut; embryonic/larval midgut; organism; and posterior midgut primordium. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
57F8-57F8; 2-96 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (21690215..21691139, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (17577720..17578644, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit k Neighboring gene TATA binding protein Neighboring gene Baramicin C Neighboring gene uncharacterized protein Neighboring gene Translocase of inner membrane 10 Neighboring gene uncharacterized protein Neighboring gene Phosphopantothenoylcysteine decarboxylase Neighboring gene Cyclic nucleotide-gated ion channel subunit B Neighboring gene HMG protein Z Neighboring gene High mobility group protein D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exhaustive identification of conserved upstream open reading frames with potential translational regulatory functions from animal genomes. Takahashi H, et al. Sci Rep, 2020 Oct 1. PMID 33004976, Free PMC Article
  2. Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species. Hayden CA, et al. BMC Genomics, 2008 Feb 1. PMID 18237443, Free PMC Article
  3. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs. Li H, et al. DNA Res, 2016 Dec. PMID 27559081, Free PMC Article
  4. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
  5. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of dopamine metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG42497-PA
CPuORF of FBgn0027360

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    21690215..21691139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001169771.2 → NP_001163242.1  uncharacterized protein Dmel_CG42497 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163242.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1JGR3
    Conserved Domains (1) summary
    pfam15932
    Location:6 → 54
    DUF4748; Domain of unknown function (DUF4748)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E1JGR3 E1JGR3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases