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ARF1 ADP-ribosylation factor 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838957, updated on 7-Sep-2023

Summary

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Gene symbol
ARF1
Gene description
ADP-ribosylation factor 1
Primary source
Araport:AT1G23490
Locus tag
AT1G23490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ADP-RIBOSYLATION FACTOR; ADP-ribosylation factor 1; ADP-RIBOSYLATION FACTOR 1A; ATARF; ATARF1; ATARFA1A; F28C11.12
Summary
Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (8336593..8338827)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene miscRNA Neighboring gene cellulose synthase-like A3 Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene OBP32pep protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of Arabidopsis AGD7 causes relocation of Golgi-localized proteins to the endoplasmic reticulum and inhibits protein trafficking in plant cells. Min MK, et al. Plant Physiol, 2007 Apr. PMID 17307897, Free PMC Article
  2. Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum. Montesinos JC, et al. Plant J, 2014 Dec. PMID 25312353
  3. Recruitment of Arf1-GDP to Golgi by Glo3p-type ArfGAPs is crucial for golgi maintenance and plant growth. Min MK, et al. Plant Physiol, 2013 Feb. PMID 23266962, Free PMC Article
  4. Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the Golgi matrix. Matheson LA, et al. Plant Physiol, 2007 Apr. PMID 17307898, Free PMC Article
  5. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Boer DR, et al. Cell, 2014 Jan 30. PMID 24485461

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_102198.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTP binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables GTP binding TAS
Traceable Author Statement
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables phospholipase activator activity TAS
Traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor 1
NP_564195.1
  • ADP-ribosylation factor 1 (ARF1); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: response to cadmium ion, N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT1G70490.2); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8336593..8338827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102198.5 → NP_564195.1  ADP-ribosylation factor 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564195.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DH91, Q9LQC8, Q9S9K6, Q9SGY6, Q9SRC3
    UniProtKB/TrEMBL
    A0A178WFN4, A0A5S9WRI1, A0A5S9Y456, A0A654G139
    Conserved Domains (1) summary
    PLN00223
    Location:1 → 181
    PLN00223; ADP-ribosylation factor; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DH91.1
Q9LQC8.2

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